GEMsME is designed to recognize KEGG Metabolism pathway maps which are made in [http://www.genome.jp/kegg/xml/ KEGG Markup Language]. You can directly retrieve KEGG pathway maps in GEMsME by setting a link where XML files locate (e.g. ftp://ftp.genome.jp/pub/kegg/xml/kgml/metabolic/rn/). Alternatively, you can import KEGG pathway maps to GEMsME.
GEMsME is designed to recognize KEGG Metabolism pathway maps which are made in [http://www.genome.jp/kegg/xml/ KEGG Markup Language]. You can directly retrieve KEGG pathway maps in GEMsME by setting a link where XML files locate (e.g. ftp://ftp.genome.jp/pub/kegg/xml/kgml/metabolic/rn/). Alternatively, you can import KEGG pathway maps to GEMsME.
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GEMsME can also recognize SBML files generated by [http://www.celldesigner.org/index.html CellDesigner], which is a popular kinetic modeling tool of biochemical networks with graphical user interface.
<u>Load CellDesigner maps</u>
<u>Load CellDesigner maps</u>
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GEMsME can also recognize SBML files generated by [http://www.celldesigner.org/index.html CellDesigner], which is a popular kinetic modeling tool of biochemical networks with graphical user interface.
The SBML models for KEGG compatible to CellDesigner can be found and downloaded in [http://www.systems-biology.org/001/001.html]. In addition, a software [http://sbml.org/Software/KEGG2SBML KEGG2SBML] can convert KEGG pathway files to SBML files. For demonstration, a SBML file [[Image:eco00010.xml]] is provided here.
The SBML models for KEGG compatible to CellDesigner can be found and downloaded in [http://www.systems-biology.org/001/001.html]. In addition, a software [http://sbml.org/Software/KEGG2SBML KEGG2SBML] can convert KEGG pathway files to SBML files. For demonstration, a SBML file [[Image:eco00010.xml]] is provided here.
Here, we provide several customized maps for your reference.
Here, we provide several customized maps for your reference.
