Here, we took the adavantage of these reconstructed metabolic networks to demonstrate the availablitity of Model Editor.
Here, we took the adavantage of these reconstructed metabolic networks to demonstrate the availablitity of Model Editor.
+
<u>'''Once the reconstructed models imported into the Model Editor, users can start to add, refine and build their own models and run FBA as well in the Model Editor.'''</u>
Because two kinds of data formats, spreadsheet and xml, are commonly used for metabolic reconstruction models, the Model Editor allows importing both formats.
Because two kinds of data formats, spreadsheet and xml, are commonly used for metabolic reconstruction models, the Model Editor allows importing both formats.
In addition to the BiGG- and SEED-based models, several published models were made by using the resource of [http://biocyc.org/ BioCyc] and [http://www.genome.jp/kegg/ KEGG]. These models can be modified and imported into the Model Editor. For example, the SBML file of Haloalkaliphile Natronomonas pharaonis [http://www.ploscompbiol.org/article/fetchSingleRepresentation.action?uri=info:doi/10.1371/journal.pcbi.1000799.s003 original release] can be modified by [[TextReplacer |TextReplacer]] with the replacing rules ([[Image:RulesforKEGG.TXT]]).
In addition to the BiGG- and SEED-based models, several published models were made by using the resource of [http://biocyc.org/ BioCyc] and [http://www.genome.jp/kegg/ KEGG]. These models can be modified and imported into the Model Editor. For example, the SBML file of Haloalkaliphile Natronomonas pharaonis [http://www.ploscompbiol.org/article/fetchSingleRepresentation.action?uri=info:doi/10.1371/journal.pcbi.1000799.s003 original release] can be modified by [[TextReplacer |TextReplacer]] with the replacing rules ([[Image:RulesforKEGG.TXT]]).
-
'''Once the reconstructed models imported into the Model Editor, users can start to add, refine and build their own models and run FBA as well in the Model Editor.'''</u>
