Version Differences for Metabolic Models

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In addition to the BiGG- and SEED-based models, several published models were made by using the resource of [http://biocyc.org/ BioCyc] and [http://www.genome.jp/kegg/ KEGG]. These models can also be modified and imported into the GEMSiRV. For example, the SBML file of Haloalkaliphile Natronomonas pharaonis [http://www.ploscompbiol.org/article/fetchSingleRepresentation.action?uri=info:doi/10.1371/journal.pcbi.1000799.s003 original release] can be modified by [[TextReplacer |TextReplacer]] with the replacing rules ([[Image:RulesforKEGG.TXT]]). 
 
In addition to the BiGG- and SEED-based models, several published models were made by using the resource of [http://biocyc.org/ BioCyc] and [http://www.genome.jp/kegg/ KEGG]. These models can also be modified and imported into the GEMSiRV. For example, the SBML file of Haloalkaliphile Natronomonas pharaonis [http://www.ploscompbiol.org/article/fetchSingleRepresentation.action?uri=info:doi/10.1371/journal.pcbi.1000799.s003 original release] can be modified by [[TextReplacer |TextReplacer]] with the replacing rules ([[Image:RulesforKEGG.TXT]]). 
 
 
 
 
 
 
+
Cellular compartments  
 
 
 
 
 
 
+
cytoplasm [c]  
 
 
+
nucleus [n]  
 
 
+
mitochondria [m]  
 
 
+
extracellular [e]  
 
 
+
golgi apparatus [g]  
 
 
+
peroxisome [x]  
 
 
+
periplasm [p]  
 
 
+
vacuole [v]  
 
 
+
chloroplast [h]  
 
 
+
lysosome [l]  
 
 
+
endoplasmic reticulum [r]  
 
 
+
thylakoid [u]