Version Differences for Metabolic Models

In addition to the BiGG- and SEED-based models, several published models were made by using the resource of [http://biocyc.org/ BioCyc] and [http://www.genome.jp/kegg/ KEGG]. These models can also be modified and imported into the GEMSiRV. For example, the SBML file of Haloalkaliphile Natronomonas pharaonis [http://www.ploscompbiol.org/article/fetchSingleRepresentation.action?uri=info:doi/10.1371/journal.pcbi.1000799.s003 original release] can be modified by [[TextReplacer |TextReplacer]] with the replacing rules ([[Image:RulesforKEGG.TXT]]). 

In addition to the BiGG- and SEED-based models, several published models were made by using the resource of [http://biocyc.org/ BioCyc] and [http://www.genome.jp/kegg/ KEGG]. These models can also be modified and imported into the GEMSiRV. For example, the SBML file of Haloalkaliphile Natronomonas pharaonis [http://www.ploscompbiol.org/article/fetchSingleRepresentation.action?uri=info:doi/10.1371/journal.pcbi.1000799.s003 original release] can be modified by [[TextReplacer |TextReplacer]] with the replacing rules ([[Image:RulesforKEGG.TXT]]). 

 

 

{| {{table border=1}} 

{| {{table border=1}} 

| align="center" style="background:#f0f0f0;"|'''Localization''' 

| align="center" style="background:#f0f0f0;"|'''Localization''' 

 

 

[5] Orth, J. D., T. M. Conrad, et al. (2011). "A comprehensive genome-scale reconstruction of Escherichia coli metabolism-2011." Mol Syst Biol 7: 535. 

[5] Orth, J. D., T. M. Conrad, et al. (2011). "A comprehensive genome-scale reconstruction of Escherichia coli metabolism-2011." Mol Syst Biol 7: 535.