In order to collect and manage information from different SBML files, TextReplacer can simply solve the known naming issues existed in the SBML files.
In order to collect and manage information from different SBML files, TextReplacer can simply solve the known naming issues existed in the SBML files.
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For examples, "_DASH_" was used by [http://bigg.ucsd.edu/ BiGG] to represent the symbol of dash in the SBML files.
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The problem is connecting data from different data sources that do not necessarily use the same id for the same object.
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For example, the species id for metabolite D-glucose in SBML file may be glc-D, glc_D or glc_DASH_D.
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For examples, "_DASH_" was used by [http://bigg.ucsd.edu/ BiGG] to represent the symbol of dash in the SBML files. Therefore, glc_DASH_D and glc-D
"Extracellular" or "Extraorganism" was used to represent the same compartment of cell.
"Extracellular" or "Extraorganism" was used to represent the same compartment of cell.
