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TextReplace, a simple tool for unifying the information described in SBML files.
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TextReplacer, a simple tool for unifying the information described in SBML files.
In order to collect and manage information from different SBML files, TextReplacer can simply solve the known naming issues existed in the SBML files.
In order to collect and manage information from different SBML files, TextReplacer can simply solve the known naming issues existed in the SBML files.
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The problem is connecting data from different data sources that do not necessarily use the same id for the same object.
For examples, the species id for metabolite D-glucose in SBML file may be "glc-D", "glc_D" or "glc_DASH_D", and "extracellular" or "extraorganism" was used to represent the same compartment of cell.
For examples, the species id for metabolite D-glucose in SBML file may be "glc-D", "glc_D" or "glc_DASH_D", and "extracellular" or "extraorganism" was used to represent the same compartment of cell.
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The problem make it difficult in connecting data from different data sources that do not necessarily use the same id for the same object.
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Therefore, with the aid of TextReplacer, the redundant data can be reduced while importing SBML models into the Model Editor.
