KEGG pathway maps
GEMsME is designed to recognize KEGG Metabolism pathway maps which are made in KEGG Markup Language. You can directly retrieve KEGG pathway maps in GEMsME by setting a link where XML files locate (e.g. ftp://ftp.genome.jp/pub/kegg/xml/kgml/metabolic/rn/). Alternatively, you can import KEGG pathway maps to GEMsME.
GEMsME can also recognize SBML files generated by CellDesigner, which is a popular kinetic modeling tool of biochemical networks with graphical user interface.
The SBML models for KEGG compatible to CellDesigner can be found and downloaded in http://www.systems-biology.org/001/001.html. In addition, a software KEGG2SBML can convert KEGG pathway files to SBML files. For demonstration, a SBML file eco00010.xml is provided here.
Customized maps
Here, we provide several customized maps for your reference. core map.cartomap