BiGG Database
The reference database file Ref BiGG.xls was reformatted from the data exported from BiGG.
The reference database file Ref BiGG GPR.xls was modified by adding Protein Index into the Ref BiGG.xls.
KEGG Database
The reference database file Ref KEGG.xls was reformatted from the data downloaded via KEGG'compound & KEGG's reaction.
Model SEED database
The reference database file Ref SEED.xls was reformatted from the data downloaded via Model SEED.
Those database files can be used as the reference database for metabolic network reconstructions in Model Editor.
Users can freely edit and update the reference database in Model Editor to the user-defined database and easily share with other users by exporting to a spreedsheet file (.xls).
Format of database
Layout of excel sheets as input for the reference database:
Metabolite Index
Abbreviation, Name, Formula, Charge, Keggid, Casnumber, Compound_names, Note
Protein Index
Abbreviation, Name, Note
Reaction Index
Abbreviation, Name, Equation, Keggid, Note