SPAdes - D2

We used Dataset 2, Rhodobacter sphaeroides strain 2.4.1.

spades.py --pe1-1 frag_1.fastq --pe1-2 frag_2.fastq --mp1-1 jump_1.fastq --mp1-2 jump_2.fastq --pacbio long.fasta -o output

spades.py --pe1-1 frag_1.fastq --pe1-2 frag_2.fastq --mp1-1 jump_1.fastq --mp1-2 jump_2.fastq -o output

Evaluation

• Benchmark genome

R. sphaeroides 2.4.1

• Evaluated by QUAST

QUAST (QUAST v2.3)

Running QUAST requires gene list and reference genome. There are 4388 genes in total.

• Score with QUAST: With PacBio Long Reads more detail

Misassemblies for Adobe reader.

• Score with QUAST: Without PacBio Long Reads more detail

Misassemblies for Adobe reader.