SPAdes - D3

We used Dataset 3, Streptococcus pneumoniae TIGR4

spades.py --pe1-1 frag_1.fastq --pe1-2 frag_2.fastq --mp1-1 jump_1.fastq --mp1-2 jump_2.fastq --pacbio long.fasta -o output

spades.py --pe1-1 frag_1.fastq --pe1-2 frag_2.fastq --mp1-1 jump_1.fastq --mp1-2 jump_2.fastq -o output

Evaluation

• Benchmark genome

S. pneumoniae TIGR4

• Evaluated by QUAST

QUAST (QUAST v2.3)

Running QUAST needs gene list and NC_003028.fna information. There are 2301 genes in total.

• Score with QUAST: With PacBio Long Reads more detail

Misassemblies for Adobe reader.

• Score with QUAST: Without PacBio Long Reads more detail

Misassemblies for Adobe reader.