You can directly edit/update the content of the imported model.
You can directly edit/update the content of the imported model.
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*'''<font size=3>Reference database creation</font>'''
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*<font size=3>Reference database creation</font>
Right click on '''Reference databases''' to <u>Import database(.xls)</u>, you can import a reference database provided in [[Reference Databases]] to create your own reference database.
Right click on '''Reference databases''' to <u>Import database(.xls)</u>, you can import a reference database provided in [[Reference Databases]] to create your own reference database.
You can add the information about metabolites and reactions described in a model to the reference database by right clicking on the metabolic model to<u> add rxn&met to the Ref. DB</u>.
You can add the information about metabolites and reactions described in a model to the reference database by right clicking on the metabolic model to<u> add rxn&met to the Ref. DB</u>.
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*'''<font size=3>Draft reconstruction generation</font>'''
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*<font size=3>Draft reconstruction generation</font>
A draft reconstruction can be generated by mapping a blank reconstruction outputed by [[GBKParser]], containing gene information only, to a reference reconstruction. You just simply right click on the blank reconstruction to<u> Draft a reconstruction</u>
A draft reconstruction can be generated by mapping a blank reconstruction outputed by [[GBKParser]], containing gene information only, to a reference reconstruction. You just simply right click on the blank reconstruction to<u> Draft a reconstruction</u>
GEMsME will extract the reactions whose associated orthologous genes can be mapped to the reference reconstruction once the list of orthologous-gene pairs is available.
GEMsME will extract the reactions whose associated orthologous genes can be mapped to the reference reconstruction once the list of orthologous-gene pairs is available.
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*'''<font size=3>Reconstruction refinement</font>'''
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*<font size=3>Reconstruction refinement</font>
You can right click on a model to <u>Generate simulation tables</u>, so that a mathematical model including a stoichiometic matrix which describes the connectivity feature of the network and a default-defined systems boundaries can be generated.
You can right click on a model to <u>Generate simulation tables</u>, so that a mathematical model including a stoichiometic matrix which describes the connectivity feature of the network and a default-defined systems boundaries can be generated.
