You can directly edit/update the content of the imported model.
You can directly edit/update the content of the imported model.
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*<font size=3>Reference database creation</font> ([http://sb.nhri.org.tw/GEMSiRV/Reconstruction%20step2.html Step-by-step])
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*<font size=3>Reference database construction</font> ([http://sb.nhri.org.tw/GEMSiRV/Reconstruction%20step2.html Step-by-step])
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Right click on '''Reference databases''' to <u>Import database (.xls)</u>, you can import a reference database provided in [[Reference Databases]] to create your own reference database.
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Right click on '''Reference databases''' to <u>Import database (.xls)</u>, you can import a reference database provided in [[Reference Databases]] to construct your own reference database.
You can add the information about metabolites and reactions described in a model to the reference database by right clicking on the metabolic model to<u> add rxn&met to the Ref. DB</u>.
You can add the information about metabolites and reactions described in a model to the reference database by right clicking on the metabolic model to<u> add rxn&met to the Ref. DB</u>.
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*<font size=3>Draft reconstruction generation</font> ([http://sb.nhri.org.tw/GEMSiRV/Reconstruction%20step3.html Step-by-step])
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*<font size=3>Draft reconstruction</font> ([http://sb.nhri.org.tw/GEMSiRV/Reconstruction%20step3.html Step-by-step])
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A draft reconstruction can be generated by mapping a blank reconstruction outputed by [[GBKParser]], containing gene information only, to a reference reconstruction. You just simply right click on the blank reconstruction to<u> Draft a reconstruction</u>
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A draft reconstruction can be generated by mapping a blank reconstruction output by [[GBKParser]], containing gene information only, to a reference reconstruction. You just simply right click on the blank reconstruction to<u> Draft a reconstruction</u>
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GEMSiRV will extract the reactions whose associated orthologous genes are present in the target organism and obey Boolean statements as described in the reference reconstruction.
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Given a user-provided list of orthologous genes, GEMSiRV will extract from the reference model of the "orthologous reaction" (i.e. reactions that are catalyzed by the protein products of orthologous genes) that conform to the gene-protein-reaction (GPR) associations defined in the reference model.
*<font size=3>Reconstruction refinement</font> ([http://sb.nhri.org.tw/GEMSiRV/Reconstruction%20step4.html Step-by-step])
*<font size=3>Reconstruction refinement</font> ([http://sb.nhri.org.tw/GEMSiRV/Reconstruction%20step4.html Step-by-step])
