Manual @Mar 7, 2011 5:31:54 PM

Reconstruction

  • Model importing and editing

Right click on Model databases, you can import a metabolic model in SBML/spreadsheet format as described in Metabolic Models.

You can directly edit/update the content of the imported model.

  • Reference database creation

Right click on Reference databases, you can import a reference database

Right click on a model, you can add the information about metabolites and reactions described in your model to the reference database.


  • Draft reconstruction generation

extracting reactions whose associated orthologous genes can be mapped to a reference reconstruction. Such an automatic function can greatly reduces the manually typing effort and provides accurate evaluations on Boolean statement once the list of orthologous-gene pairs is available.

Reference database creation

Right click on the Project to Creat/Edit Models, Reconstruction

  • Simulation
  • Visualization