Paper1

Paper:

   Reducing assembly complexity of microbial genomes with single-molecule sequencing

Data:
http://www.cbcb.umd.edu/software/PBcR/closure/index.html

目前驗證結果:

   1 filtered_short_read(100X or 118X) 校正效果較好 =>  Hybrid assembly to do list (3)
   2 pacbioToCA 搭配genome size 會得到較正常的 coverage depth(比pacbioToCA自已估算好) => 20130718_驗證Hybrid_assembly那篇paper的結果
   3 filtered_long_read(25X) 組裝效果較好 => Hybrid assembly to do list (2)
   4 NHRI_Patching => 用25X的corrected_clr, 效果沒有比較好(沒有比用所有的corrected_clr好)。