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ALLPATHS-LG
E. coli
R. sphaeroides
S. pneumoniae
PBcR pipeline
Data
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pacBioToCA
runCA
wgs-8.2
SPAdes
E. coli
R. sphaeroides
S. pneumoniae
Hybrid
SSPACE-longread
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Non-hybrid assembly
Pacbio Data
HGAP
PBcR pipeline
wgs-8.2
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(
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) 12 May 2015 21:11 . . (0) . .
File:spades D2 nopac.pdf
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(
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) 12 May 2015 21:11 . . (0) . .
SPAdes - D2
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(
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) 12 May 2015 21:10 . . (0) . .
File:spades D2 nopac,pdf.pdf
(
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) 12 May 2015 20:57 . . (0) . .
File:Allpaths D2 nopac.pdf
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(
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) 12 May 2015 20:57 . . (0) . .
R. sphaeroides
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(
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) 12 May 2015 20:56 . . (0) . .
File:Allpaths D2 nopac,pdf.pdf
(
diff
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) 12 May 2015 20:50 . . (0) . .
HGAP
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Postprocess by discarding lower-case bases
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(
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) 12 May 2015 20:50 . . (0) . .
File:hgap3 d9 woglc.fa
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(
diff
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) 12 May 2015 20:49 . . (+2) . .
HGAP
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Postprocess by discarding lower-case bases
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(
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) 12 May 2015 20:48 . . (0) . .
File:hgap3 d9 wog.fa
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(
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) 12 May 2015 20:47 . . (0) . .
File:hgap3 d9 1.2g.fa
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(
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) 12 May 2015 20:47 . . (0) . .
File:hgap3 d9 0.8g.fa
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(
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) 12 May 2015 20:47 . . (0) . .
File:hgap3 d9 1.1g.fa
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(
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) 12 May 2015 20:46 . . (0) . .
File:hgap3 d9 0.9g.fa
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(
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) 12 May 2015 20:45 . . (0) . .
File:hgap3 d9.fa
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(
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) 29 January 2015 21:33 . . (-2) . .
PBcR
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Performance
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(
diff
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) 29 January 2015 21:33 . . (+1) . .
PBcR
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Performance
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(
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) 13 January 2015 20:50 . . (0) . .
Wgs-8.2
(
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) 13 January 2015 20:49 . . (0) . .
File:spade hybrid 76X.pdf
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(
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) 13 January 2015 20:37 . . (-1) . .
SPAdes - hybrid
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Evaluation
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(
diff
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history
) 13 January 2015 20:36 . . (+28) . .
SPAdes - hybrid
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Evaluation
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(
diff
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history
) 13 January 2015 20:35 . . (-27) . .
SPAdes - hybrid
(
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Evaluation
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(
diff
) (
history
) 13 January 2015 20:32 . . (-76) . .
SPAdes - hybrid
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Evaluation
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(
diff
) (
history
) 13 January 2015 20:31 . . (-92) . .
Wgs-8.2
(
diff
) (
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) 13 January 2015 20:28 . . (+100) . .
Wgs-8.2
(
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) 13 January 2015 20:26 . . (0) . .
File:wgs hb.pdf
n
(
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) 13 January 2015 20:26 . . (-76) . .
Wgs-8.2
(
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) 13 January 2015 20:25 . . (-23) . .
PBcR
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(
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) 13 January 2015 20:19 . . (0) . .
HGAP
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Postprocess by discarding lower-case bases
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(
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) 13 January 2015 20:18 . . (+181) . .
HGAP
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Postprocess by discarding lower-case bases
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(
diff
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) 13 January 2015 20:12 . . (+75) . .
Wgs-8.2
(
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) 13 January 2015 20:06 . . (-10) . .
HGAP
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Postprocess by discarding lower-case bases
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(
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) 13 January 2015 20:04 . . (-26) . .
HGAP
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Postprocess by discarding lower-case bases
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(
diff
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) 13 January 2015 20:02 . . (+28) . .
HGAP
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Postprocess by discarding lower-case bases
)
(
diff
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) 13 January 2015 20:01 . . (-27) . .
HGAP
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Postprocess by discarding lower-case bases
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(
diff
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) 13 January 2015 20:01 . . (+1) . .
HGAP
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Postprocess by discarding lower-case bases
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(
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) 13 January 2015 19:44 . . (+7) . .
HGAP
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Postprocess by discarding lower-case bases
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(
diff
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history
) 13 January 2015 19:41 . . (+1) . .
PBcR
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higher coverage bias
)
(
diff
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) 7 January 2015 03:50 . . (+66) . .
SPAdes - hybrid
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Evaluation
)
(
diff
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history
) 7 January 2015 02:08 . . (-319) . .
PBcR
(
→
Dataset 9 (E. coli K-12, P4-C2 chemistry, 20 Kbp, 1 SMRT cell)
)
(
diff
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) 7 January 2015 02:08 . . (+320) . .
PBcR
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Performance
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(
diff
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) 7 January 2015 02:07 . . (-90) . .
PBcR
(
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Dataset 8 (P. heparinus DSM1279, 7 SMRT cells)
)
(
diff
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history
) 7 January 2015 02:07 . . (-91) . .
PBcR
(
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Dataset 7, (M. ruber DSM1279, 4 SMRT cells)
)
(
diff
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) 7 January 2015 02:07 . . (+318) . .
PBcR
(
diff
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) 7 January 2015 02:06 . . (-90) . .
PBcR
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Dataset 6 (E.coli K-12 MG1655, 8 SMRT cells)
)
(
diff
) (
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) 7 January 2015 02:05 . . (+2,038) . .
PBcR
(
diff
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) 7 January 2015 01:52 . . (0) . .
File:pbcr d7 all.fa
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(
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) 7 January 2015 01:48 . . (0) . . File:pbcr d7 all.fa
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(
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) 7 January 2015 01:46 . . (0) . .
File:pbcr d7 all 1g.fa
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(
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) 7 January 2015 01:45 . . (+3) . .
PBcR
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Performance
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(
diff
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) 7 January 2015 01:42 . . (-1,219) . .
PBcR pipeline
(
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Dataset 9 (E. coli K-12, P4-C2 chemistry, 20 Kbp, 1 SMRT cell)
)
(
diff
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) 7 January 2015 01:41 . . (-4) . .
PBcR
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7
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(
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) 7 January 2015 01:41 . . (-4) . .
PBcR
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6
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(
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) 7 January 2015 01:41 . . (-4) . .
PBcR
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(
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) 7 January 2015 01:41 . . (-4) . .
PBcR
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4
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(
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) 7 January 2015 01:41 . . (-4) . .
PBcR
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3
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(
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) 7 January 2015 01:41 . . (-4) . .
PBcR
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2
)
(
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) 7 January 2015 01:40 . . (-5) . .
PBcR
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1
)
(
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) 7 January 2015 01:40 . . (-352) . .
PBcR
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Performance
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(
diff
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) 7 January 2015 01:37 . . (-24) . .
PBcR
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Performance
)
(
diff
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history
) 7 January 2015 01:36 . . (-69) . .
PBcR
(
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7
)
(
diff
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history
) 7 January 2015 01:36 . . (0) . .
File:pbcr d8 wogpb.pdf
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(
diff
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) 7 January 2015 01:35 . . (+1) . .
PBcR
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7
)
(
diff
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) 7 January 2015 01:31 . . (+6) . .
PBcR
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7
)
(
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) 7 January 2015 01:30 . . (0) . .
File:pbcr d8 1.2g.pdf
n
(
diff
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) 7 January 2015 01:24 . . (-63) . .
PBcR
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6
)
(
diff
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) 7 January 2015 01:23 . . (0) . .
File:pbcr d8 0.8g.pdf
n
(
diff
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) 7 January 2015 01:17 . . (-64) . .
PBcR
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5
)
(
diff
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) 7 January 2015 01:17 . . (-69) . .
PBcR
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4
)
(
diff
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) 7 January 2015 00:56 . . (0) . .
File:pbcr d8 1.1g.pdf
n
(
diff
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) 7 January 2015 00:56 . . (+6) . .
PBcR
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4
)
(
diff
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) 7 January 2015 00:47 . . (-70) . .
PBcR
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3
)
(
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) 7 January 2015 00:47 . . (0) . .
File:pbcr d8 0.9g.pdf
n
(
diff
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) 7 January 2015 00:47 . . (+6) . .
PBcR
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3
)
(
diff
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history
) 7 January 2015 00:33 . . (0) . .
File:pbcr d8 wog.pdf
n
(
diff
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) 7 January 2015 00:33 . . (+5) . .
PBcR
(
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1
)
(
diff
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history
) 7 January 2015 00:24 . . (0) . .
File:pbcr d8.pdf
n
(
diff
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) 7 January 2015 00:24 . . (-69) . .
PBcR
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2
)
(
diff
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history
) 7 January 2015 00:22 . . (+24) . .
PBcR
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Performance
)
(
diff
) (
history
) 7 January 2015 00:12 . . (0) . .
File:pbcr d7 wog.pdf
n
(
diff
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history
) 7 January 2015 00:11 . . (+5) . .
PBcR
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Performance
)
(
diff
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history
) 6 January 2015 22:18 . . (0) . .
File:pbcr d5 wog.pdf
n
(
diff
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history
) 6 January 2015 22:18 . . (+4) . .
PBcR
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Performance
)
(
diff
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history
) 6 January 2015 22:17 . . (+1) . .
PBcR
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Performance
)
(
diff
) (
history
) 6 January 2015 22:17 . . (+23) . .
PBcR
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Performance
)
(
diff
) (
history
) 6 January 2015 20:10 . . (-4) . .
PBcR
(
→
higher coverage bias
)
(
diff
) (
history
) 6 January 2015 20:09 . . (-22) . .
PBcR
(
→
higher coverage bias
)
(
diff
) (
history
) 6 January 2015 20:08 . . (+195) . .
PBcR
(
→
higher coverage bias
)
(
diff
) (
history
) 6 January 2015 20:07 . . (-22) . .
PBcR
(
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higher coverage bias
)
(
diff
) (
history
) 6 January 2015 20:07 . . (+2) . .
PBcR
(
→
higher coverage bias
)
(
diff
) (
history
) 6 January 2015 20:05 . . (+2) . .
PBcR
(
→
higher coverage bias
)
(
diff
) (
history
) 6 January 2015 20:05 . . (+16) . .
PBcR
(
→
higher coverage bias
)
(
diff
) (
history
) 6 January 2015 20:04 . . (+6) . .
PBcR
(
→
higher coverage bias
)
(
diff
) (
history
) 6 January 2015 20:04 . . (-10) . .
PBcR
(
→
higher coverage bias
)
(
diff
) (
history
) 6 January 2015 20:04 . . (-1) . .
PBcR
(
→
higher coverage bias
)
(
diff
) (
history
) 6 January 2015 20:03 . . (+10) . .
PBcR
(
→
higher coverage bias
)
(
diff
) (
history
) 6 January 2015 20:03 . . (+218) . .
PBcR
(
→
higher coverage bias
)
(
diff
) (
history
) 6 January 2015 03:57 . . (+354) . .
PBcR
(
→
higher coverage bias
)
(
diff
) (
history
) 6 January 2015 03:50 . . (+87) . .
PBcR
(
→
higher coverage bias
)
(
diff
) (
history
) 6 January 2015 03:45 . . (+249) . .
PBcR
(
→
higher coverage bias
)