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ALLPATHS-LG
E. coli
R. sphaeroides
S. pneumoniae
PBcR pipeline
Data
Read Depths
pacBioToCA
runCA
wgs-8.2
SPAdes
E. coli
R. sphaeroides
S. pneumoniae
Hybrid
SSPACE-longread
Result
Non-hybrid assembly
Pacbio Data
HGAP
PBcR pipeline
wgs-8.2
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(
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history
) 13 March 2014 02:58 . . (+19) . .
HGAP
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Discard Lower-case bases
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(
diff
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history
) 13 March 2014 02:57 . . (+19) . .
HGAP
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Discard Lower-case bases
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(
diff
) (
history
) 13 March 2014 02:49 . . (0) . .
HGAP
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Assembly
)
(
diff
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history
) 13 March 2014 02:48 . . (0) . .
File:SCA d6.pdf
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(
diff
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history
) 13 March 2014 02:48 . . (+23) . .
SCA
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Performance
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(
diff
) (
history
) 13 March 2014 02:42 . . (-33) . .
HGAP
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Postprocess by discarding lower-case bases
)
(
diff
) (
history
) 13 March 2014 02:42 . . (-34) . .
HGAP
(
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Postprocess by discarding unconvincing contigs
)
(
diff
) (
history
) 13 March 2014 02:41 . . (+19) . .
HGAP
(
→
Discard Lower-case bases
)
(
diff
) (
history
) 13 March 2014 02:41 . . (0) . .
HGAP
(
→
Discard Lower-case bases
)
(
diff
) (
history
) 13 March 2014 02:40 . . (+18) . .
HGAP
(
→
Discard Unconvincing Contigs
)
(
diff
) (
history
) 13 March 2014 02:40 . . (+31) . .
HGAP
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Discard Contigs
)
(
diff
) (
history
) 13 March 2014 02:39 . . (-3) . .
HGAP
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Performance
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(
diff
) (
history
) 13 March 2014 02:39 . . (-3) . .
HGAP
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Performance
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(
diff
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history
) 13 March 2014 02:39 . . (-3) . .
HGAP
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Performance
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(
diff
) (
history
) 13 March 2014 02:39 . . (-49) . .
HGAP
(
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Postprocess by discarding unconvincing contigs
)
(
diff
) (
history
) 13 March 2014 02:38 . . (+18) . .
HGAP
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Discard Unconvincing Contigs
)
(
diff
) (
history
) 13 March 2014 02:38 . . (+38) . .
HGAP
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Assembly
)
(
diff
) (
history
) 13 March 2014 02:37 . . (-3) . .
HGAP
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Performance
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(
diff
) (
history
) 13 March 2014 02:37 . . (-5) . .
HGAP
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Performance
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(
diff
) (
history
) 13 March 2014 02:36 . . (+3) . .
HGAP
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Postprocess by discard unconvincing contigs
)
(
diff
) (
history
) 13 March 2014 02:34 . . (-5) . .
HGAP
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→
Dataset 5 (E. coli K-12 MG1655, 17 SMRT cells)
)
(
diff
) (
history
) 13 March 2014 02:27 . . (+2) . .
HGAP
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Performance
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(
diff
) (
history
) 13 March 2014 02:22 . . (+2) . .
HGAP
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Performance
)
(
diff
) (
history
) 13 March 2014 02:05 . . (+121) . .
HGAP
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Performance
)
(
diff
) (
history
) 13 March 2014 02:01 . . (-2) . .
S. pneumoniae
(
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Evaluation
)
(
diff
) (
history
) 13 March 2014 02:01 . . (+127) . .
HGAP
(
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Discard Lower-case bases
)
(
diff
) (
history
) 13 March 2014 02:00 . . (-2) . .
R. sphaeroides
(
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Evaluation
)
(
diff
) (
history
) 13 March 2014 02:00 . . (+94) . .
HGAP
(
→
Discard Contigs
)
(
diff
) (
history
) 13 March 2014 02:00 . . (-8) . .
HGAP
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Dataset 8 (P. heparinus DSM2366, 7 SMRT cells)
)
(
diff
) (
history
) 13 March 2014 01:59 . . (+129) . .
HGAP
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Dataset 8 (P. heparinus DSM2366, 7 SMRT cells)
)
(
diff
) (
history
) 13 March 2014 01:59 . . (-7) . .
HGAP
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Dataset 9 (E. coli K-12 MG1655, P4-C2 chemistry, 20 Kbp, 1 SMRT cell)
)
(
diff
) (
history
) 13 March 2014 01:56 . . (+197) . .
Pacbio Data
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Dataset 9, E. coli P4-C2 chemistry, 20Kbp library, 1 SMRT cells
)
(
diff
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history
) 13 March 2014 01:53 . . (+18) . .
Data
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Raw
)
(
diff
) (
history
) 13 March 2014 01:52 . . (+13) . .
Pacbio Data
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Dataset 9, E. coli P4-C2 chemistry, 20Kbp library, 1 SMRT cells
)
(
diff
) (
history
) 13 March 2014 01:52 . . (+290) . .
Pacbio Data
(
diff
) (
history
) 13 March 2014 01:48 . . (-143) . .
S. pneumoniae
(
diff
) (
history
) 13 March 2014 01:42 . . (-253) . .
R. sphaeroides
(
diff
) (
history
) 13 March 2014 01:38 . . (-122) . .
R. sphaeroides
(
diff
) (
history
) 13 March 2014 01:36 . . (+8) . .
HGAP
(
→
Dataset 9 (E. coli K-12 MG1655, P4-C2 chemistry, 20 Kbp, 1 SMRT cell)
)
(
diff
) (
history
) 13 March 2014 01:34 . . (-1) . .
HGAP
(
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Dataset 9 (E. coli K-12 MG1655, P4-C2 chemistry, 20 Kbp, 1 SMRT cell)
)
(
diff
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history
) 13 March 2014 01:32 . . (+17) . .
HGAP
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Performance
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(
diff
) (
history
) 13 March 2014 01:31 . . (-3) . .
HGAP
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Performance
)
(
diff
) (
history
) 13 March 2014 01:29 . . (+2,256) . .
HGAP
(
→
Dataset 9 (E. coli K-12 MG1655, P4-C2 chemistry, 20 Kbp, 1 SMRT cell)
)
(
diff
) (
history
) 13 March 2014 01:28 . . (+3) . .
HGAP
(
→
Dataset 9 E. coli K-12 MG1655, P4-C2 chemistry, 20 Kbp, 1 SMRT cell
)
(
diff
) (
history
) 13 March 2014 01:27 . . (+2) . .
HGAP
(
diff
) (
history
) 13 March 2014 01:26 . . (+73) . .
HGAP
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→
Dataset 5 (E. coli K-12 MG1655, 17 SMRT cells)
)
(
diff
) (
history
) 13 March 2014 01:17 . . (+42) . .
HGAP
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→
DataSet4
)
(
diff
) (
history
) 13 March 2014 01:16 . . (-1) . .
HGAP
(
diff
) (
history
) 13 March 2014 01:14 . . (+2) . .
HGAP
(
→
Dataset 8 P. heparinus DSM2366, 7 SMRT cells
)
(
diff
) (
history
) 13 March 2014 01:14 . . (+40) . .
HGAP
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DataSet3
)
(
diff
) (
history
) 13 March 2014 01:13 . . (+38) . .
HGAP
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DataSet2
)
(
diff
) (
history
) 13 March 2014 01:12 . . (+4) . .
HGAP
(
→
Dataset 6 (E. coli K-12 MG1655, 8 SMRT cells)
)
(
diff
) (
history
) 13 March 2014 01:12 . . (+2) . .
HGAP
(
→
Dataset 6, E. coli K-12 MG1655, 8 SMRT cells
)
(
diff
) (
history
) 13 March 2014 01:11 . . (+36) . .
HGAP
(
→
DataSet1
)
(
diff
) (
history
) 13 March 2014 01:09 . . (+2) . .
E. coli
(
→
Website data
)
(
diff
) (
history
) 13 March 2014 00:57 . . (-133) . .
E. coli
(
diff
) (
history
) 12 March 2014 20:24 . . (-264) . .
E. coli
(
→
Raw data
)
(
diff
) (
history
) 12 March 2014 20:19 . . (+14) . .
E. coli
(
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Raw data
)
(
diff
) (
history
) 12 March 2014 20:18 . . (+34) . .
E. coli
(
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Raw data
)
(
diff
) (
history
) 12 March 2014 20:15 . . (+16) . .
E. coli
(
→
Raw data
)
(
diff
) (
history
) 12 March 2014 20:13 . . (-7) . .
E. coli
(
diff
) (
history
) 12 March 2014 20:11 . . (+81) . .
E. coli
(
diff
) (
history
) 12 March 2014 20:02 . . (+97) . .
SCA
(
diff
) (
history
) 12 March 2014 20:00 . . (+10) . .
Pacbio Data
(
diff
) (
history
) 12 March 2014 20:00 . . (+73) . .
Data
(
diff
) (
history
) 12 March 2014 19:58 . . (+17) . .
Pacbio Data
(
diff
) (
history
) 12 March 2014 19:57 . . (+134) . .
Pacbio Data
(
diff
) (
history
) 12 March 2014 03:28 . . (0) . .
File:sca d6 rg6 3.fa
n
(
diff
) (
history
) 12 March 2014 03:28 . . (0) . .
File:sca d6 rg6 2.fa
n
(
diff
) (
history
) 12 March 2014 03:27 . . (0) . .
File:sca d6 rg6 1.fa
n
(
diff
) (
history
) 12 March 2014 03:27 . . (+85) . .
SCA
(
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Performance
)
(
diff
) (
history
) 12 March 2014 03:19 . . (0) . .
File:sca d6 rg4 3.fa
n
(
diff
) (
history
) 12 March 2014 03:19 . . (+28) . .
SCA
(
→
Performance
)
(
diff
) (
history
) 12 March 2014 03:18 . . (-2) . .
RunCA
(
diff
) (
history
) 12 March 2014 03:18 . . (+60) . .
RunCA
(
diff
) (
history
) 12 March 2014 03:18 . . (0) . .
RunCA
(
diff
) (
history
) 12 March 2014 03:10 . . (0) . .
File:sca d6 rg4 2.fa
n
(
diff
) (
history
) 12 March 2014 03:09 . . (+28) . .
SCA
(
→
Performance
)
(
diff
) (
history
) 12 March 2014 03:08 . . (0) . .
File:sca d6 rg4 1.fa
n
(
diff
) (
history
) 12 March 2014 03:07 . . (0) . .
File:sca d6 all.fa
n
(
diff
) (
history
) 12 March 2014 03:07 . . (+8) . .
SCA
(
→
Performance
)
(
diff
) (
history
) 12 March 2014 03:06 . . (+1,836) . .
RunCA
(
diff
) (
history
) 12 March 2014 03:05 . . (+23) . .
SCA
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Performance
)
(
diff
) (
history
) 12 March 2014 03:04 . . (0) . .
File:contigs.fa
n
(
diff
) (
history
) 12 March 2014 03:03 . . (+23) . .
SCA
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Performance
)
(
diff
) (
history
) 12 March 2014 02:35 . . (+1) . .
SCA
(
diff
) (
history
) 12 March 2014 02:34 . . (+23) . .
SCA
(
diff
) (
history
) 7 February 2014 21:46 . . (+121) . .
PacBioToCA
(
diff
) (
history
) 7 February 2014 21:42 . . (+1,085) . .
PacBioToCA
(
diff
) (
history
) 7 February 2014 21:06 . . (+346) . .
PacBioToCA
(
diff
) (
history
) 7 February 2014 20:46 . . (+1,012) . .
PacBioToCA
(
diff
) (
history
) 7 February 2014 19:37 . . (+186) . .
Read Depths
(
→
Evaluation
)
(
diff
) (
history
) 7 February 2014 19:34 . . (+56) . .
Read Depths
(
→
Evaluation
)
(
diff
) (
history
) 7 February 2014 02:56 . . (+444) . .
Read Depths
(
→
Evaluation
)
(
diff
) (
history
) 7 February 2014 02:33 . . (-14) . .
Read Depths
(
→
Evaluation
)
(
diff
) (
history
) 7 February 2014 02:33 . . (-422) . .
Read Depths
(
→
Evaluation
)
(
diff
) (
history
) 7 February 2014 02:29 . . (+1,737) . .
Read Depths
(
→
Evaluation
)
(
diff
) (
history
) 7 February 2014 02:02 . . (+381) . .
Read Depths
(
→
Evaluation
)
(
diff
) (
history
) 7 February 2014 01:42 . . (+1) . .
Read Depths
(
→
Evaluation
)
(
diff
) (
history
) 7 February 2014 01:41 . . (+380) . .
Read Depths
(
→
Evaluation
)
