Version Differences for ALLPATHS-LG Data

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  Escherichia coli K12 MG1655. The E. coli MG1655 consists of a circular chromosome of 4,639,675 bp in length.    Escherichia coli K12 MG1655. The E. coli MG1655 consists of a circular chromosome of 4,639,675 bp in length. 
       
    + #!/bin/sh  
       
    + # Example ALLPATHS-LG data preperation script  
       
    + # ALLPATHS-LG needs 100 MB of stack space. In 'csh' run 'limit stacksize 100000'.  
    + ulimit -s 100000  
       
    + mkdir -p test.genome/data  
       
    + PrepareAllPathsInputs.pl\  
    + DATA_DIR=$PWD/test.genome/data\  
    + PLOIDY=1\  
    + FRAG_FRAC=0.088\  
    + IN_GROUPS_CSV=in_groups.csv\  
    + IN_LIBS_CSV=in_libs.csv\  
    + OVERWRITE=True\  
    + | tee prepare.out  
       
       
       
  =R. sphaeroides =    =R. sphaeroides =