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We downloaded three species sequencing data, E. coli, R. sphaeroides and S. pneumoniae from ALLPATHS-LG [ftp://ftp.broadinstitute.org/pub/papers/assembly/Ribeiro2012/ website], and their raw data from Sequence Read Archive [http://www.ncbi.nlm.nih.gov/sra (SRA)]
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The illumina sequencing data, E. coli, R. sphaeroides and S. pneumonia were available at ALLPATHS-LG [ftp://ftp.broadinstitute.org/pub/papers/assembly/Ribeiro2012/ website], and their raw data from
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Escherichia coli K12 MG1655. The E. coli MG1655 consists of a circular chromosome of 4,639,675 bp in length.
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We downloaded Illumina Data
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mkdir -p test.genome/data
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PrepareAllPathsInputs.pl\ |
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PrepareAllPathsInputs.pl\ |
