Version Differences for ALLPATHS-LG Data
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(→Raw data)
|
(→100X)
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| Line 53: | |||
| | tee prepare.out | | tee prepare.out | ||
| ==100X== | ==100X== | ||
| + | insert size = 180bp | ||
| + | SRR447685 single end = 13,457,571 reads | ||
| + | Total coverage = (13457571*180/4639675) = 522.0975 | ||
| + | Ratio = 100 / 522.0975 = 0.192 | ||
| + | PrepareAllPathsInputs.pl\ | ||
| + | DATA_DIR=$PWD/test.genome/data\ | ||
| + | PLOIDY=1\ | ||
| + | FRAG_FRAC=0.192\ | ||
| + | IN_GROUPS_CSV=in_groups.csv\ | ||
| + | IN_LIBS_CSV=in_libs.csv\ | ||
| + | OVERWRITE=True\ | ||
| + | | tee prepare.out | ||
| =R. sphaeroides = | =R. sphaeroides = | ||