Version Differences for ALLPATHS-LG Data
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(→Self-fraction data)
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(→100X)
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| Line 117: | |||
| We randomly selected 100X coverage data from fragment library of raw data by prepare.sh. | We randomly selected 100X coverage data from fragment library of raw data by prepare.sh. | ||
| - | insert size = 180bp <br> | + | insert size = 180bp |
| - | SRR447685 single end = 13,457,571 reads <br> | + | SRR125492 single end = 11,339,101 reads |
| - | Total coverage = (13457571*180/4639675) = 522.0975 <br> | + | Total coverage = (11,339,101*180/4606060) = 443.1202 |
| - | Fraction = 100 / 522.0975 = 0.192 <br> | + | Ratio = 100/443.1202 = 0.226 |
| PrepareAllPathsInputs.pl\ | PrepareAllPathsInputs.pl\ | ||
| DATA_DIR=$PWD/test.genome/data\ | DATA_DIR=$PWD/test.genome/data\ | ||
| PLOIDY=1\ | PLOIDY=1\ | ||
| - | FRAG_FRAC=0.192\ | + | FRAG_FRAC=0.226\ |
| IN_GROUPS_CSV=in_groups.csv\ | IN_GROUPS_CSV=in_groups.csv\ | ||
| IN_LIBS_CSV=in_libs.csv\ | IN_LIBS_CSV=in_libs.csv\ | ||