Version Differences for ALLPATHS-LG Data
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(→Raw data)
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(→Self-fraction data)
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| Line 153: | |||
| Accession : [http://www.ncbi.nlm.nih.gov/sra/SRX109959 SRX109959],[http://www.ncbi.nlm.nih.gov/sra/SRX109958 SRX109958] | Accession : [http://www.ncbi.nlm.nih.gov/sra/SRX109959 SRX109959],[http://www.ncbi.nlm.nih.gov/sra/SRX109958 SRX109958] | ||
| ==Self-fraction data== | ==Self-fraction data== | ||
| - | We randomly selected the same fraction as website data from fragment library of raw data by prepare.sh. | + | We randomly selected the same fraction as website data from fragment and jumping library of raw data by prepare.sh. |
| PrepareAllPathsInputs.pl\ | PrepareAllPathsInputs.pl\ | ||
| DATA_DIR=$PWD/test.genome/data\ | DATA_DIR=$PWD/test.genome/data\ | ||
| PLOIDY=1\ | PLOIDY=1\ | ||
| - | FRAG_FRAC=0.384\ | + | FRAG_FRAC=0.187\ |
| + | JUMP_FRAC=0.558\ | ||
| IN_GROUPS_CSV=in_groups.csv\ | IN_GROUPS_CSV=in_groups.csv\ | ||
| IN_LIBS_CSV=in_libs.csv\ | IN_LIBS_CSV=in_libs.csv\ | ||