Version Differences for Data
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(→Subreads)
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(→Long Reads)
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| Line 44: | |||
| m120229_012852_42139_c000301732550000001500000112311360_s1_p0.bas.h5 (1.0GB) <br> | m120229_012852_42139_c000301732550000001500000112311360_s1_p0.bas.h5 (1.0GB) <br> | ||
| m120229_193409_42129_c000304212550000001500000112311380_s1_p0.bas.h5 (1000MB) <br> | m120229_193409_42129_c000304212550000001500000112311380_s1_p0.bas.h5 (1000MB) <br> | ||
| == Subreads == | == Subreads == | ||
| We have run smrtpipe.py ([https://github.com/PacificBiosciences/SMRT-Analysis/wiki/SMRT-Pipe-Reference-Guide-v2.0 SMRT analysis]) with the following params.xml to get filtered subreads of continuous long reads (CLR). | We have run smrtpipe.py ([https://github.com/PacificBiosciences/SMRT-Analysis/wiki/SMRT-Pipe-Reference-Guide-v2.0 SMRT analysis]) with the following params.xml to get filtered subreads of continuous long reads (CLR). | ||
| Line 55: | |||
| <param name="minSubReadLength"> | <param name="minSubReadLength"> | ||
| <value>50</value> | <value>50</value> | ||
| + | == 200X == | ||
| + | We have downloaded the 200X filtered fastq sequences from ftp://ftp.cbcb.umd.edu/pub/data/PBcR/closure_paper/K12/filtered_subreads.200X.fastq.bz2 | ||