Version Differences for Dataset1
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(→Short reads)
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(→Short reads)
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| Line 8: | |||
| java -jar SamToFastq.jar INPUT=Ecoli_MG1655_s_6_2_bfast.bam FASTQ=Ecoli_MG1655_s2.fastq | java -jar SamToFastq.jar INPUT=Ecoli_MG1655_s_6_2_bfast.bam FASTQ=Ecoli_MG1655_s2.fastq | ||
| - | We combined Ecoli_MG1655_s1.fastq andEcoli_MG1655_s2.fastq to Ecoli_MG1655_PE.fastq. | + | We combined Ecoli_MG1655_s1.fastq and Ecoli_MG1655_s2.fastq to Ecoli_MG1655_PE.fastq. |
| - | java convertFastqToFastaAndQual MiSeq_PE.fastq MiSeq_PE.fna MiSeq_PE.qual | + | java convertFastqToFastaAndQual Ecoli_MG1655_PE.fastq Ecoli_MG1655_PE.fna Ecoli_MG1655_PE.qual |
| convert-fasta-to-v2.pl -mean 214 -stddev 21 -m Mate_info -l Illumia_Ecoli -s Ecoli_MG1655_PE.fna -q Ecoli_MG1655_PE.qual > Ecoli_MG1655_PE.frg | convert-fasta-to-v2.pl -mean 214 -stddev 21 -m Mate_info -l Illumia_Ecoli -s Ecoli_MG1655_PE.fna -q Ecoli_MG1655_PE.qual > Ecoli_MG1655_PE.frg | ||
| == Long reads == | == Long reads == | ||