Version Differences for E. coli

(→Evaluation)
(→Evaluation)
Line 103:
  | # contigs||14||1||1||1    | # contigs||14||1||1||1 
  |-    |- 
- | Largest contig||4625005||4638970||4638970||4638970   + | Largest contig||4638970||4625005||4638970||4638970  
  |-    |- 
- | Total length||4652215||4638970||4638970||4638970   + | Total length||4638970||4652215||4638970||4638970  
  |-    |- 
- | N50||4625005||4638970||4638970||4638970   + | N50||4638970||4625005||4638970||4638970  
  |-    |- 
  | align="left" style="background:#f0f0f0;"|'''Misassemblies'''    | align="left" style="background:#f0f0f0;"|'''Misassemblies''' 
Line 113:
- | # misassemblies||5||1||1||1   + | # misassemblies||1||5||1||1  
  |-    |- 
- |Misassembled contigs length ||4625005||4638970||4638970||4638970   + |Misassembled contigs length ||4638970||4625005||4638970||4638970  
  |-    |- 
  | align="left" style="background:#f0f0f0;"|'''Mismatches'''    | align="left" style="background:#f0f0f0;"|'''Mismatches''' 
Line 119:
- |# mismatches per 100kbp ||1.06||0.11||0.06||0.06   + |# mismatches per 100kbp ||0.11||1.06||0.06||0.06  
  |-    |- 
- |# indels per 100kbp ||0.61||0.09||0.09||0.11   + |# indels per 100kbp ||0.09||0.61||0.09||0.11  
  |-    |- 
- |# N's per 100kbp ||282.94||0||0||0   + |# N's per 100kbp ||0||282.94||0||0  
  |-    |- 
  | align="left" style="background:#f0f0f0;"|'''Genome statistics'''    | align="left" style="background:#f0f0f0;"|'''Genome statistics''' 
Line 127:
- | Genome fraction (%)||99.418||99.983||99.983||99.983   + | Genome fraction (%)||99.983||99.418||99.983||99.983  
  |-    |- 
- | Duplication ratio ||1.013||1||1||1   + | Duplication ratio ||1||1.013||1||1  
  |-    |- 
- | # genes||4471 + 2 part　||4494 + 1 part　||4494 + 1 part　||4495 + 0 part   + | # genes||4494 + 1 part||4471 + 2 part　||4494 + 1 part　||4495 + 0 part  
  |-    |- 
- | NGA50 || 2714032 || 4638970 || 3763133 || 4032768   + | NGA50 || 4638970 || 2714032 || 3763133 || 4032768  
  |-    |- 
  |}    |} 
Line 139:
  {| {{table}} border="１"    {| {{table}} border="１" 
  | align="left" style="background:#f0f0f0;"|'''Basic statistics'''    | align="left" style="background:#f0f0f0;"|'''Basic statistics''' 
    + | align="left" style="background:#f0f0f0;"|'''Published Data'''  
  | align="left" style="background:#f0f0f0;"|'''Raw Data'''    | align="left" style="background:#f0f0f0;"|'''Raw Data''' 
- | align="left" style="background:#f0f0f0;"|'''Website Data'''   + | align="left" style="background:#f0f0f0;"|'''Fractional Data'''  
- | align="left" style="background:#f0f0f0;"|'''Self-fraction Data'''   + | align="left" style="background:#f0f0f0;"|'''50X coverage'''  
- | align="left" style="background:#f0f0f0;"|'''100 Coverage'''   + | align="left" style="background:#f0f0f0;"|'''100X coverage'''  
       
  |-    |- 
- | # contigs||1||2||5||3   + | # contigs||2||1||5||3  
  |-    |- 
- | Largest contig||4633080||4631220||4575759||4560636   + | Largest contig||4631220||4633080||4575759||4560636  
  |-    |- 
- | Total length||4633080||4633146||4698903||4713335   + | Total length||4633146||4633080||4698903||4713335  
  |-    |- 
- | N50||4633080||4631220||4575759||4590636   + | N50||4631220||4633080||4575759||4590636  
  |-    |- 
  | align="left" style="background:#f0f0f0;"|'''Misassemblies'''    | align="left" style="background:#f0f0f0;"|'''Misassemblies''' 
Line 157:
- | # misassemblies||7||3||8||8   + | # misassemblies||3||7||8||8  
  |-    |- 
- |Misassembled contigs length ||4633080||4631220||4577746||4711603   + |Misassembled contigs length ||4631220||4633080||4577746||4711603  
  |-    |- 
  | align="left" style="background:#f0f0f0;"|'''Mismatches'''    | align="left" style="background:#f0f0f0;"|'''Mismatches''' 
Line 163:
- |# mismatches per 100kbp ||1.42||1.19||2.84||1.89   + |# mismatches per 100kbp ||1.19||1.42||2.84||1.89  
  |-    |- 
- |# indels per 100kbp ||0.83||1.13||3.26||0.61   + |# indels per 100kbp ||1.13||0.83||3.26||0.61  
  |-    |- 
- |# N's per 100kbp ||1545.02||533.22||698.87||801.7   + |# N's per 100kbp ||533.22||1545.02||698.87||801.7  
  |-    |- 
  | align="left" style="background:#f0f0f0;"|'''Genome statistics'''    | align="left" style="background:#f0f0f0;"|'''Genome statistics''' 
Line 171:
- | Genome fraction (%)||98.343||99.345||99.265||99.284   + | Genome fraction (%)||99.345||98.343||99.265||99.284  
  |-    |- 
- | Duplication ratio ||1.016||1.012||1.021||1.028   + | Duplication ratio ||1.012||1.016||1.021||1.028  
  |-    |- 
- | # genes||4395 + 31 part　||4465 + 11 part　||4460 + 14 part　||4459 + 9 part   + | # genes||4465 + 11 part　||4395 + 31 part　||4460 + 14 part　||4459 + 9 part  
  |-    |- 
- | NGA50 ||687701||3180483||654008||1295677   + | NGA50 ||3180483||687701||654008||1295677  
  |-    |- 
  |}    |}