Version Differences for HGAP

(→Hierarchical genome-assembly process)
(→Hierarchical genome-assembly process)
Line 22:
  2. execute Quiver protocol. <br>    2. execute Quiver protocol. <br> 
  smrtpipe.py --params=Quiver.xml xml:input.xml    smrtpipe.py --params=Quiver.xml xml:input.xml 
       
       
       
       
       
       
       
- and executed the [[Media:HGAP.xml | RS_HGAP_Assembly.1]] and [[Media:Quiver.xml | RS_Modification_and_Motif_Analysis.1]] protocol.      
       
       
  =Dataset 5 (''E. coli'' K-12 MG1655, 17 SMRT cells)=    =Dataset 5 (''E. coli'' K-12 MG1655, 17 SMRT cells)= 
  We randomly selected four, six and eight SMRT cells three times for each, and evaluated the assemblies by QUAST against the reference genome ([ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_K_12_substr__MG1655_uid57779/ NC_000913]) and [[Media: Ec_gene_result.ncbi | Ec_gene_list]].    We randomly selected four, six and eight SMRT cells three times for each, and evaluated the assemblies by QUAST against the reference genome ([ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_K_12_substr__MG1655_uid57779/ NC_000913]) and [[Media: Ec_gene_result.ncbi | Ec_gene_list]].