Version Differences for HGAP

(→Hierarchical genome-assembly process)
(→Postprocess by discarding lower-case bases)
Line 151:
  | style="background:#f0f0f0;"| [[Media: HGAP_D5.pdf | '''Misassemblies''']]||||||||||||||||||    | style="background:#f0f0f0;"| [[Media: HGAP_D5.pdf | '''Misassemblies''']]|||||||||||||||||| 
  |-    |- 
- |# misassemblies||8||10||10||9||8||7||8||9||8   + |# misassemblies||8||10||10||9||8||8||8||9||8  
  |-    |- 
  |Misassembled contigs length ||3 768 995||4 666 999||4 644 254||4 660 999||4 646 000||3 299 005||4 660 992||4 638 338||4 647 000    |Misassembled contigs length ||3 768 995||4 666 999||4 644 254||4 660 999||4 646 000||3 299 005||4 660 992||4 638 338||4 647 000 
Line 159:
  |# mismatches per 100kbp||0.15||0.5||0.37||0.19||0.11||0.11||0.13||0.22||0.17    |# mismatches per 100kbp||0.15||0.5||0.37||0.19||0.11||0.11||0.13||0.22||0.17 
  |-    |- 
- |# indels per 100kbp||0.37||2.93||0.22||1.44||0.54||0.58||0.19||1.34||0.47   + |# indels per 100kbp||0.32||2.76||0.22||1.44||0.5||0.58||0.19||1.34||0.47  
  |-    |- 
  |# N's per 100kbp ||0||0||0||0||0||0||0||0||0    |# N's per 100kbp ||0||0||0||0||0||0||0||0||0 
Line 167:
  |Genome fraction(%) ||100||100||99.994||99.999||100||100||100||99.99||100    |Genome fraction(%) ||100||100||99.994||99.999||100||100||100||99.99||100 
  |-    |- 
- |Duplication ratio ||1.002||1.008||1.002||1.005||1.004||1.006||1.005||1.005||1.004   + |Duplication ratio ||1.002||1.008||1.002||1.005||1.003||1.006||1.005||1.005||1.004  
  |-    |- 
  |# genes ||4494+3 part||4494+3 part||4493+3 part||4493+4 part||4495+2 part||4495+2 part||4495+2 part||4493+4 part||4495+2 part    |# genes ||4494+3 part||4494+3 part||4493+3 part||4493+4 part||4495+2 part||4495+2 part||4495+2 part||4493+4 part||4495+2 part