Version Differences for HGAP
|
(→Assembly)
|
(→Assembly)
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| Line 696: | |||
| |# contigs||[[Media:f25_d9_all.fa | 1]]||[[Media:f25_d9_all_0.9g.fa | 1]]||[[Media:f25_d9_all_1.1g.fa | 1]]||[[Media:f25_d9_all_0.8g.fa | 1]]||[[Media:f25_d9_all_1.2g.fa | 1]] | |# contigs||[[Media:f25_d9_all.fa | 1]]||[[Media:f25_d9_all_0.9g.fa | 1]]||[[Media:f25_d9_all_1.1g.fa | 1]]||[[Media:f25_d9_all_0.8g.fa | 1]]||[[Media:f25_d9_all_1.2g.fa | 1]] | ||
| |- | |- | ||
| - | |Largest contig||4644061||4651184||4644056||4651207||4651348 | + | |Largest contig||4657584||4657584||4657492||4657578||4657479 |
| |- | |- | ||
| - | |Total length||4644061||4651184||4644056||4651207||4651348 | + | |Total length||4657584||4657584||4657492||4657578||4657479 |
| |- | |- | ||
| - | |N50||4644061||4651184||4644056||4651207||4651348 | + | |N50||4657584||4657584||4657492||4657578||4657479 |
| |- | |- | ||
| - | | style="background:#f0f0f0;"| [[Media:SCA_d6.pdf | '''Misassemblies''']]|||||||||| | + | | style="background:#f0f0f0;"| '''Misassemblies'''|||||||||| |
| |- | |- | ||
| |# misassemblies||8||8||8||8||8 | |# misassemblies||8||8||8||8||8 | ||
| Line 708: | |||
| - | |Misassembled contigs length ||4644061||4651184||4644056||4651207||4651348 | + | |Misassembled contigs length ||4657584||4657492||4657578||4657479||4657584||4657553 |
| |- | |- | ||
| | style="background:#f0f0f0;"| '''Mismatches'''|||||||||| | | style="background:#f0f0f0;"| '''Mismatches'''|||||||||| | ||
| Line 712: | |||
| - | |# mismatches per 100kbp||0.13||0.39||0.13||0.34||0.19 | + | |# mismatches per 100kbp||0.15||0.15||0.15||0.15||0.15||0.15 |
| |- | |- | ||
| - | |# indels per 100kbp||31.34||31.64||31.27||33.04||30.63 | + | |# indels per 100kbp||0.19||0.17||0.19||0.17||0.19||0.19 |
| |- | |- | ||
| |# N's per 100kbp ||0||0||0||0||0 | |# N's per 100kbp ||0||0||0||0||0 | ||
| Line 718: | |||
| | style="background:#f0f0f0;"| '''Genome Statistics'''|||||||||| | | style="background:#f0f0f0;"| '''Genome Statistics'''|||||||||| | ||
| |- | |- | ||
| - | |Genome fraction(%) ||100||99.998||100||99.998||100 | + | |Genome fraction(%) ||100||100||100||100||100 |
| |- | |- | ||
| - | |Duplication ratio ||1.001||1.003||1.001||1.003||1.003 | + | |Duplication ratio ||1.004||1.004||1.004||1.004||1.004 |
| |- | |- | ||
| - | |# genes ||4494 + 3 part||4493 + 4 part||4494 + 3 part||4493 + 4 part||4494 +3 part | + | |# genes ||4494 + 3 part||4494 + 3 part||4494 + 3 part||4494 + 3 part||4494 +3 part |
| |- | |- | ||
| - | |NGA50 ||3025485||960375||3025483||960380||960403 | + | |NGA50 ||3026417||3026417||3026417||3026417||3026417 |
| |- | |- | ||
| - | | align="left" style="background:#f0f0f0;"|''' Running Time '''||24m 50s||23m 26s||24m 25s||21m 32s||26m 5s | + | | align="left" style="background:#f0f0f0;"|''' Running Time '''||2hr 21m||2hr 8m||2hr 13m||2hr 2m||2hr 22m |
| |} | |} | ||
| ==Postprocess by discarding lower-case bases == | ==Postprocess by discarding lower-case bases == | ||