Version Differences for HGAP
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(→Assembly)
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(→Postprocess by discarding lower-case bases)
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| Line 734: | |||
| {| {{table}} border="1" | {| {{table}} border="1" | ||
| | align="center" style="background:#f0f0f0;"|'''Statistics without reference ''' | | align="center" style="background:#f0f0f0;"|'''Statistics without reference ''' | ||
| - | | align="center" style="background:#f0f0f0;"|'''All Data''' | + | | align="center" style="background:#f0f0f0;"|'''genomeSize=4650000''' |
| + | | align="center" style="background:#f0f0f0;"|'''genomeSize=4185000''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''genomeSize=5115000''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''genomeSize=3720000''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''genomeSize=5580000''' | ||
| |- | |- | ||
| - | |# contigs||[[Media:hgap3_d9_all.fa | 1]] | + | |# contigs||[[Media:f25_d9_all.fa | 1]]||[[Media:f25_d9_all_0.9g.fa | 1]]||[[Media:f25_d9_all_1.1g.fa | 1]]||[[Media:f25_d9_all_0.8g.fa | 1]]||[[Media:f25_d9_all_1.2g.fa | 1]] |
| + | |- | ||
| + | |Largest contig||4657584||4657584||4657492||4657578||4657479 | ||
| |- | |- | ||
| - | |Largest contig||4 652 541 | + | |Total length||4657584||4657584||4657492||4657578||4657479 |
| |- | |- | ||
| - | |Total length||4 652 541 | + | |N50||4657584||4657584||4657492||4657578||4657479 |
| |- | |- | ||
| - | |N50||4 652 541 | + | | style="background:#f0f0f0;"| '''Misassemblies'''|||||||||| |
| |- | |- | ||
| - | | style="background:#f0f0f0;"| [[Media: HGAP3_D9.pdf | '''Misassemblies''']]|| | + | |# misassemblies||8||8||8||8||8 |
| |- | |- | ||
| - | |# misassemblies||8 | + | |Misassembled contigs length ||4657584||4657584||4657492||4657578||4657479 |
| |- | |- | ||
| - | |Misassembled contigs length ||4 652 541 | + | | style="background:#f0f0f0;"| '''Mismatches'''|||||||||| |
| |- | |- | ||
| - | | style="background:#f0f0f0;"| '''Mismatches'''|| | + | |# mismatches per 100kbp||0.15||0.15||0.15||0.15||0.15 |
| |- | |- | ||
| - | |# mismatches per 100kbp||0.19 | + | |# indels per 100kbp||0.19||0.17||0.19||0.17||0.19 |
| |- | |- | ||
| - | |# indels per 100kbp||0.56 | + | |# N's per 100kbp ||0||0||0||0||0 |
| |- | |- | ||
| - | |# N's per 100kbp ||0 | + | | style="background:#f0f0f0;"| '''Genome Statistics'''|||||||||| |
| |- | |- | ||
| - | | style="background:#f0f0f0;"| '''Genome Statistics'''|| | + | |Genome fraction(%) ||100||100||100||100||100 |
| |- | |- | ||
| - | |Genome fraction(%) ||100 | + | |Duplication ratio ||1.004||1.004||1.004||1.004||1.004 |
| |- | |- | ||
| - | |Duplication ratio ||1.004 | + | |# genes ||4494 + 3 part||4494 + 3 part||4494 + 3 part||4494 + 3 part||4494 +3 part |
| |- | |- | ||
| - | |# genes ||4494+3 part | + | |NGA50 ||3026417||3026417||3026417||3026417||3026417 |
| |- | |- | ||
| - | |NGA50 ||3 026 418 | + | | align="left" style="background:#f0f0f0;"|''' Running Time '''||2hr 21m||2hr 8m||2hr 13m||2hr 2m||2hr 22m |
| - | |- | ||
| |} | |} | ||