Version Differences for HGAP
|
(→HGAP 3.0 with Dataset 9)
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(→Postprocess by discarding lower-case bases)
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| Line 781: | |||
| |- | |- | ||
| - | |# contigs||[[Media:hgap_d9_all.fa | 1]] | + | |# contigs||1 |
| |- | |- | ||
| - | |Largest contig||4 654 377 | + | |Largest contig||4657553 |
| |- | |- | ||
| - | |Total length||4 654 377 | + | |Total length||4657553 |
| |- | |- | ||
| - | |N50||4 654 377 | + | |N50||4657553 |
| |- | |- | ||
| | style="background:#f0f0f0;"| [[Media: HGAP_D9.pdf | '''Misassemblies''']]|| | | style="background:#f0f0f0;"| [[Media: HGAP_D9.pdf | '''Misassemblies''']]|| | ||
| Line 793: | |||
| |# misassemblies||8 | |# misassemblies||8 | ||
| |- | |- | ||
| - | |Misassembled contigs length ||4 654 377 | + | |Misassembled contigs length ||4657553 |
| |- | |- | ||
| | style="background:#f0f0f0;"| '''Mismatches'''|| | | style="background:#f0f0f0;"| '''Mismatches'''|| | ||
| Line 799: | |||
| |# mismatches per 100kbp||0.15 | |# mismatches per 100kbp||0.15 | ||
| |- | |- | ||
| - | |# indels per 100kbp||4.81 | + | |# indels per 100kbp||0.19 |
| |- | |- | ||
| |# N's per 100kbp ||0 | |# N's per 100kbp ||0 | ||
| Line 807: | |||
| |Genome fraction(%) ||100 | |Genome fraction(%) ||100 | ||
| |- | |- | ||
| - | |Duplication ratio ||1.003 | + | |Duplication ratio ||1.004 |
| |- | |- | ||
| |# genes ||4494+3 part | |# genes ||4494+3 part | ||
| Line 813: | |||
| - | |NGA50 ||3 026 319 | + | |NGA50 ||3026417 |
| |- | |- | ||
| |} | |} | ||