Version Differences for HGAP
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(→DataSet3)
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(→DataSet3)
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| =DataSet3= | =DataSet3= | ||
| + | {| {{table}} border="1" | ||
| + | | align="center" style="background:#f0f0f0;"|'''Statistics without reference ''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''All Data''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''4 SMRT cells : 1st Set''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''4 SMRT cells : 2nd Set''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''4 SMRT cells : 3rd Set''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''6 SMRT cells : 1st Set''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''6 SMRT cells : 2nd Set''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''6 SMRT cells : 3rd Set''' | ||
| + | |- | ||
| + | |# contigs||16||10||14||16||9||18||13 | ||
| + | |- | ||
| + | |Largest contig||2 198 457||3 4848 77||1 936 831||1 948 632||2 104 087||1 169 224||1 439 551 | ||
| + | |- | ||
| + | |Total length||4 808 733||4 706 800||4 705 398||4 745 036||4 741 512||4 814 718||4 749 785 | ||
| + | |- | ||
| + | |N50||1 005 770 ||3 484 877||966 809||1 434 284||1 655 500||676 526||1 268 010 | ||
| + | |- | ||
| + | | style="background:#f0f0f0;"| '''Misassemblies'''|||||||||||||| | ||
| + | |- | ||
| + | |# misassemblies||19||9||12||15||14||17||11 | ||
| + | |- | ||
| + | |Misassembled contigs length ||2 939 040||3 530 352||2 949 761||3 653 461||3 820 624||2 387 129||3 986 402 | ||
| + | |- | ||
| + | | style="background:#f0f0f0;"| '''Mismatches'''|||||||||||||| | ||
| + | |- | ||
| + | |# mismatches per 100kbp||0.8||0.43||0.58||1.36||0.15||0.95||0.58 | ||
| + | |- | ||
| + | |# indels per 100kbp||5.71||2.98||4.45||9.56||1.77||8.02||6.88 | ||
| + | |- | ||
| + | |# N's per 100kbp ||0||0||0||0||0||0||0 | ||
| + | |- | ||
| + | | style="background:#f0f0f0;"| '''Genome Statistics'''|||||||||||||| | ||
| + | |- | ||
| + | |Genome fraction(%) ||100||100||99.815||99.87||100||99.995||99.979 | ||
| + | |- | ||
| + | |Duplication ratio ||1.037||1.016||1.017||1.025||1.022||1.038||1.025 | ||
| + | |- | ||
| + | |# genes ||4494+3 part||4494+3 part||4480+7 part||4485+9 part||4494+3 part||4493+4 part||4492+5 part | ||
| + | |- | ||
| + | |NGA50 ||615 234||1 205 052||572 342||875 953||844 482||633 220||1 267 242 | ||
| + | |- | ||
| + | |'''Running Time'''||19hr 06m||13hr 34m||13hr 21m||12hr 38m||21hr 28m||22hr 56m||22hr 07m | ||
| + | |- | ||
| + | |} | ||