Version Differences for HGAP

Revision as of 31 October 2013 20:56

(→Discard Contigs)

Revision as of 31 October 2013 20:58

(→Discard Lower-case bases)

 |}
 ==Discard Lower-case bases==
 								{| {{table}} border="1"
 								| align="center" style="background:#f0f0f0;"|'''Statistics without reference '''
 								| align="center" style="background:#f0f0f0;"|'''All Data'''
 								| align="center" style="background:#f0f0f0;"|'''4 SMRT cells : 1st Set'''
 								| align="center" style="background:#f0f0f0;"|'''4 SMRT cells : 2nd Set'''
 								| align="center" style="background:#f0f0f0;"|'''4 SMRT cells : 3rd Set'''
 								|-
 								|# contigs||3||2||2||5
 								|-
 								|Largest contig||2 943 267||2 927 454||2 929 942||2 226 051
 								|-
 								|Total length||5 178 932||5 167 623||5 167 190||5 172 946
 								|-
 								|N50||2 934 267||2 927 454||2 929 942||2 133 457
 								|-
 								| style="background:#f0f0f0;"| '''Misassemblies'''||||||||
 								|-
 								|# misassemblies||0||1||0||1
 								|-
 								|Misassembled contigs length ||0||2 240 169||0||13 124
 								|-
 								| style="background:#f0f0f0;"| '''Mismatches'''||||||||
 								|-
 								|# mismatches per 100kbp||0||0.04||0.08||6.45
 								|-
 								|# indels per 100kbp||1.05||0.68||0.6||1.82
 								|-
 								|# N's per 100kbp ||0||0||0||0
 								|-
 								| style="background:#f0f0f0;"| '''Genome Statistics'''||||||||
 								|-
 								|Genome fraction(%) ||100||99.951||99.916||99.878
 								|-
 								|Duplication ratio ||1.003||1.002||1.002||1.004
 								|-
 								|# genes ||4338+1 part||4336+2 part||4335+3 part||4333+5 part
 								|-
 								|NGA50 ||2 934 267||2 927 454||2 929 942||2 133 457
 								|-
 								|}