Version Differences for HGAP

After discarding unconvincing contigs, we discarded low quality bases which present in lower-case from contigs two-side ends.

-

===Performance===

+

==Performance==

{| {{table}} border="1"

| align="center" style="background:#f0f0f0;"|'''Statistics without reference '''

-

| align="center" style="background:#f0f0f0;"|'''All Data'''

| align="center" style="background:#f0f0f0;"|'''4 SMRT cells : 1st Set'''

| align="center" style="background:#f0f0f0;"|'''4 SMRT cells : 2nd Set'''

| align="center" style="background:#f0f0f0;"|'''6 SMRT cells : 2nd Set'''

| align="center" style="background:#f0f0f0;"|'''6 SMRT cells : 3rd Set'''

+

| align="center" style="background:#f0f0f0;"|'''8 SMRT cells : 1st Set'''

+

| align="center" style="background:#f0f0f0;"|'''8 SMRT cells : 2nd Set'''

+

| align="center" style="background:#f0f0f0;"|'''8 SMRT cells : 3rd Set'''

|-

-

|# contigs||7||8||10||12||4||9||12

+

|# contigs||2||6||1||4||2||4||2||3||2

|-

-

|Largest contig||2 196 495||3 478 799||1 936 007||1 948 495||2 100 388||1 165 497||1 438 506

+

|Largest contig||3 768 995||4 105 501||4 644 254||3 784 001||4 646 000||3 287 004||4 646 998||4 622 502||4 647 000

|-

-

|Total length||4 694 972||4 662 655||4 649 216||4 657 587||4 668 899||4 681 301||4 714 790

+

|Total length||4 649 500||4 678 503||4 644 254||4 660 999||4 655 498||4 667 500||4 660 992||4 660 836||4 656 000

|-

-

|N50||1 005 009||3 478 799||964 998||1 433 016||1 654 501||375 502||1 266 511

+

|N50||3 768 995||4 105 501||4 644 254||3 784 001||4 646 000||3 287 004||4 646 998||4 622 502||4 647 000

|-

-

| style="background:#f0f0f0;"| '''Misassemblies'''||||||||||||||

+

| style="background:#f0f0f0;"| '''Misassemblies'''||||||||||||||||||

|-

-

|# misassemblies||9||9||7||8||9||7||8

+

|# misassemblies||||||||||||||||||

|-

-

|Misassembled contigs length ||2 210 994||3 490 490||2 901 005||3 496 520||3 754 889||2 256 498||3 197 010

+

|Misassembled contigs length ||||||||||||||||||

|-

-

| style="background:#f0f0f0;"| '''Mismatches'''||||||||||||||

+

| style="background:#f0f0f0;"| '''Mismatches'''||||||||||||||||||

|-

-

|# mismatches per 100kbp||0.63||0.28||0.22||0.91||0.15||0.54||0.47

+

|# mismatches per 100kbp||||||||||||||||||

|-

-

|# indels per 100kbp||5.02||2.55||1.84||7.08||1.68||4.91||6.12

+

|# indels per 100kbp||||||||||||||||||

|-

-

|# N's per 100kbp ||0||0||0||0||0||0||0

+

|# N's per 100kbp ||0||0||0||0||0||0||0||0||0

|-

-

| style="background:#f0f0f0;"| '''Genome Statistics'''||||||||||||||

+

| style="background:#f0f0f0;"| '''Genome Statistics'''||||||||||||||||||

|-

-

|Genome fraction(%) ||100||99.842||99.776||99.889||100||99.985||99.979

+

|Genome fraction(%) ||||||||||||||||||

|-

-

|Duplication ratio ||1.012||1.008||1.005||1.006||1.006||1.009||1.018

+

|Duplication ratio ||||||||||||||||||

|-

-

|# genes ||4494+3 part||4485+6 part||4478+9 part||4482+11 part||4494+3 part||4493+4 part||4492+5 part

+

|# genes ||4494+3 part||4495+2 part||4493+3 part||4493+4 part||4495+2 part||4495+2 part||4495+2 part||4493+4 part||4495+2 part

|-

-

|NGA50 ||614 657||1 088 544||572 342||875 453||843 983||632 720||1 265 743

+

|NGA50 ||||||||||||||||||

-

|-

+

|-

|}

 After discarding unconvincing contigs, we discarded low quality bases which present in lower-case from contigs two-side ends.
-								===Performance===
+								==Performance==
 {| {{table}} border="1"
 | align="center" style="background:#f0f0f0;"|'''Statistics without reference '''
-								| align="center" style="background:#f0f0f0;"|'''All Data'''
 | align="center" style="background:#f0f0f0;"|'''4 SMRT cells : 1st Set'''
 | align="center" style="background:#f0f0f0;"|'''4 SMRT cells : 2nd Set'''
 | align="center" style="background:#f0f0f0;"|'''6 SMRT cells : 2nd Set'''
 | align="center" style="background:#f0f0f0;"|'''6 SMRT cells : 3rd Set'''
 								| align="center" style="background:#f0f0f0;"|'''8 SMRT cells : 1st Set'''
 								| align="center" style="background:#f0f0f0;"|'''8 SMRT cells : 2nd Set'''
 								| align="center" style="background:#f0f0f0;"|'''8 SMRT cells : 3rd Set'''
 |-
-								|# contigs||7||8||10||12||4||9||12
+								|# contigs||2||6||1||4||2||4||2||3||2
 |-
-								|Largest contig||2 196 495||3 478 799||1 936 007||1 948 495||2 100 388||1 165 497||1 438 506
+								|Largest contig||3 768 995||4 105 501||4 644 254||3 784 001||4 646 000||3 287 004||4 646 998||4 622 502||4 647 000
 |-
-								|Total length||4 694 972||4 662 655||4 649 216||4 657 587||4 668 899||4 681 301||4 714 790
+								|Total length||4 649 500||4 678 503||4 644 254||4 660 999||4 655 498||4 667 500||4 660 992||4 660 836||4 656 000
 |-
-								|N50||1 005 009||3 478 799||964 998||1 433 016||1 654 501||375 502||1 266 511
+								|N50||3 768 995||4 105 501||4 644 254||3 784 001||4 646 000||3 287 004||4 646 998||4 622 502||4 647 000
 |-
-								| style="background:#f0f0f0;"| '''Misassemblies'''||||||||||||||
+								| style="background:#f0f0f0;"| '''Misassemblies'''||||||||||||||||||
 |-
-								|# misassemblies||9||9||7||8||9||7||8
+								|# misassemblies||||||||||||||||||
 |-
-								|Misassembled contigs length ||2 210 994||3 490 490||2 901 005||3 496 520||3 754 889||2 256 498||3 197 010
+								|Misassembled contigs length ||||||||||||||||||
 |-
-								| style="background:#f0f0f0;"| '''Mismatches'''||||||||||||||
+								| style="background:#f0f0f0;"| '''Mismatches'''||||||||||||||||||
 |-
-								|# mismatches per 100kbp||0.63||0.28||0.22||0.91||0.15||0.54||0.47
+								|# mismatches per 100kbp||||||||||||||||||
 |-
-								|# indels per 100kbp||5.02||2.55||1.84||7.08||1.68||4.91||6.12
+								|# indels per 100kbp||||||||||||||||||
 |-
-								|# N's per 100kbp ||0||0||0||0||0||0||0
+								|# N's per 100kbp ||0||0||0||0||0||0||0||0||0
 |-
-								| style="background:#f0f0f0;"| '''Genome Statistics'''||||||||||||||
+								| style="background:#f0f0f0;"| '''Genome Statistics'''||||||||||||||||||
 |-
-								|Genome fraction(%) ||100||99.842||99.776||99.889||100||99.985||99.979
+								|Genome fraction(%) ||||||||||||||||||
 |-
-								|Duplication ratio ||1.012||1.008||1.005||1.006||1.006||1.009||1.018
+								|Duplication ratio ||||||||||||||||||
 |-
-								|# genes ||4494+3 part||4485+6 part||4478+9 part||4482+11 part||4494+3 part||4493+4 part||4492+5 part
+								|# genes ||4494+3 part||4495+2 part||4493+3 part||4493+4 part||4495+2 part||4495+2 part||4495+2 part||4493+4 part||4495+2 part
 |-
-								|NGA50 ||614 657||1 088 544||572 342||875 453||843 983||632 720||1 265 743
+								|NGA50 ||||||||||||||||||
 								|-
 |}