Version Differences for HGAP

Revision as of 13 March 2014 01:28

(→Dataset 9 E. coli K-12 MG1655, P4-C2 chemistry, 20 Kbp, 1 SMRT cell)

Revision as of 13 March 2014 01:29

(→Dataset 9 (E. coli K-12 MG1655, P4-C2 chemistry, 20 Kbp, 1 SMRT cell))

 =Dataset 9 (''E. coli'' K-12 MG1655, P4-C2 chemistry, 20 Kbp, 1 SMRT cell)=
 								==Performance==
 								{| {{table}} border="1"
 								| align="center" style="background:#f0f0f0;"|'''Statistics without reference '''
 								| align="center" style="background:#f0f0f0;"|'''All Data'''
 								|-
 								|# contigs||3
 								|-
 								|Largest contig||2 548 031
 								|-
 								|Total length||3 121 070
 								|-
 								|N50||2 548 031
 								|-
 								| style="background:#f0f0f0;"| '''Misassemblies'''||
 								|-
 								|# misassemblies||1
 								|-
 								|Misassembled contigs length ||2 548 031
 								|-
 								| style="background:#f0f0f0;"| '''Mismatches'''||
 								|-
 								|# mismatches per 100kbp||0.52
 								|-
 								|# indels per 100kbp||2.71
 								|-
 								|# N's per 100kbp ||0
 								|-
 								| style="background:#f0f0f0;"| '''Genome Statistics'''||
 								|-
 								|Genome fraction(%) ||99.986
 								|-
 								|Duplication ratio ||1.017
 								|-
 								|# genes ||3103+2 part
 								|-
 								|NGA50 ||1 155 126
 								|-
 								|'''Running Time'''||18hr 19m
 								|-
 								|}
 								==Performance==
 								{| {{table}} border="1"
 								| align="center" style="background:#f0f0f0;"|'''Statistics without reference '''
 								| align="center" style="background:#f0f0f0;"|'''All Data'''
 								|-
 								|# contigs||3
 								|-
 								|Largest contig||2 548 031
 								|-
 								|Total length||3 121 070
 								|-
 								|N50||2 548 031
 								|-
 								| style="background:#f0f0f0;"| '''Misassemblies'''||
 								|-
 								|# misassemblies||1
 								|-
 								|Misassembled contigs length ||2 548 031
 								|-
 								| style="background:#f0f0f0;"| '''Mismatches'''||
 								|-
 								|# mismatches per 100kbp||0.52
 								|-
 								|# indels per 100kbp||2.71
 								|-
 								|# N's per 100kbp ||0
 								|-
 								| style="background:#f0f0f0;"| '''Genome Statistics'''||
 								|-
 								|Genome fraction(%) ||99.986
 								|-
 								|Duplication ratio ||1.017
 								|-
 								|# genes ||3103+2 part
 								|-
 								|NGA50 ||1 155 126
 								|-
 								|'''Running Time'''||18hr 19m
 								|-
 								|}
 								==Performance==
 								{| {{table}} border="1"
 								| align="center" style="background:#f0f0f0;"|'''Statistics without reference '''
 								| align="center" style="background:#f0f0f0;"|'''All Data'''
 								|-
 								|# contigs||3
 								|-
 								|Largest contig||2 548 031
 								|-
 								|Total length||3 121 070
 								|-
 								|N50||2 548 031
 								|-
 								| style="background:#f0f0f0;"| '''Misassemblies'''||
 								|-
 								|# misassemblies||1
 								|-
 								|Misassembled contigs length ||2 548 031
 								|-
 								| style="background:#f0f0f0;"| '''Mismatches'''||
 								|-
 								|# mismatches per 100kbp||0.52
 								|-
 								|# indels per 100kbp||2.71
 								|-
 								|# N's per 100kbp ||0
 								|-
 								| style="background:#f0f0f0;"| '''Genome Statistics'''||
 								|-
 								|Genome fraction(%) ||99.986
 								|-
 								|Duplication ratio ||1.017
 								|-
 								|# genes ||3103+2 part
 								|-
 								|NGA50 ||1 155 126
 								|-
 								|'''Running Time'''||18hr 19m
 								|-
 								|}