Version Differences for HGAP
|
(→Performance)
|
(→Dataset 9 (E. coli K-12 MG1655, P4-C2 chemistry, 20 Kbp, 1 SMRT cell))
|
| Line 526: | |||
| =Dataset 9 (''E. coli'' K-12 MG1655, P4-C2 chemistry, 20 Kbp, 1 SMRT cell)= | =Dataset 9 (''E. coli'' K-12 MG1655, P4-C2 chemistry, 20 Kbp, 1 SMRT cell)= | ||
| - | ==Discard Unconvincing Contigs== | + | ==Performance== |
| {| {{table}} border="1" | {| {{table}} border="1" | ||
| | align="center" style="background:#f0f0f0;"|'''Statistics without reference ''' | | align="center" style="background:#f0f0f0;"|'''Statistics without reference ''' | ||
| Line 532: | |||
| |- | |- | ||
| - | |# contigs||1 | + | |# contigs||2 |
| |- | |- | ||
| |Largest contig||4 656 681 | |Largest contig||4 656 681 | ||
| Line 538: | |||
| - | |Total length||4 656 681 | + | |Total length||4 672 546 |
| |- | |- | ||
| |N50||4 656 681 | |N50||4 656 681 | ||
| Line 542: | |||
| | style="background:#f0f0f0;"| '''Misassemblies'''|| | | style="background:#f0f0f0;"| '''Misassemblies'''|| | ||
| |- | |- | ||
| - | |# misassemblies||8 | + | |# misassemblies||9 |
| |- | |- | ||
| - | |Misassembled contigs length ||4 656 681 | + | |Misassembled contigs length ||4 672 546 |
| |- | |- | ||
| | style="background:#f0f0f0;"| '''Mismatches'''|| | | style="background:#f0f0f0;"| '''Mismatches'''|| | ||
| Line 558: | |||
| |Genome fraction(%) ||100 | |Genome fraction(%) ||100 | ||
| |- | |- | ||
| - | |Duplication ratio ||1.004 | + | |Duplication ratio ||1.007 |
| |- | |- | ||
| |# genes ||4494+3 part | |# genes ||4494+3 part | ||
| Line 568: | |||
| |} | |} | ||
| - | ==Performance== | + | ==Discard Unconvincing Contigs== |
| {| {{table}} border="1" | {| {{table}} border="1" | ||
| | align="center" style="background:#f0f0f0;"|'''Statistics without reference ''' | | align="center" style="background:#f0f0f0;"|'''Statistics without reference ''' | ||
| Line 574: | |||
| |- | |- | ||
| - | |# contigs||3 | + | |# contigs||1 |
| |- | |- | ||
| - | |Largest contig||2 548 031 | + | |Largest contig||4 656 681 |
| |- | |- | ||
| - | |Total length||3 121 070 | + | |Total length||4 656 681 |
| |- | |- | ||
| - | |N50||2 548 031 | + | |N50||4 656 681 |
| |- | |- | ||
| | style="background:#f0f0f0;"| '''Misassemblies'''|| | | style="background:#f0f0f0;"| '''Misassemblies'''|| | ||
| Line 586: | |||
| - | |# misassemblies||1 | + | |# misassemblies||8 |
| |- | |- | ||
| - | |Misassembled contigs length ||2 548 031 | + | |Misassembled contigs length ||4 656 681 |
| |- | |- | ||
| | style="background:#f0f0f0;"| '''Mismatches'''|| | | style="background:#f0f0f0;"| '''Mismatches'''|| | ||
| Line 592: | |||
| - | |# mismatches per 100kbp||0.52 | + | |# mismatches per 100kbp||0.15 |
| |- | |- | ||
| - | |# indels per 100kbp||2.71 | + | |# indels per 100kbp||4.87 |
| |- | |- | ||
| |# N's per 100kbp ||0 | |# N's per 100kbp ||0 | ||
| Line 598: | |||
| | style="background:#f0f0f0;"| '''Genome Statistics'''|| | | style="background:#f0f0f0;"| '''Genome Statistics'''|| | ||
| |- | |- | ||
| - | |Genome fraction(%) ||99.986 | + | |Genome fraction(%) ||100 |
| |- | |- | ||
| - | |Duplication ratio ||1.017 | + | |Duplication ratio ||1.004 |
| |- | |- | ||
| - | |# genes ||3103+2 part | + | |# genes ||4494+3 part |
| |- | |- | ||
| - | |NGA50 ||1 155 126 | + | |NGA50 ||2 995 500 |
| |- | |- | ||
| |'''Running Time'''||18hr 19m | |'''Running Time'''||18hr 19m | ||
| |- | |- | ||
| |} | |} | ||
| ==Performance== | ==Performance== | ||