Version Differences for HGAP
|
(→Performance)
|
(→Dataset 5 (E. coli K-12 MG1655, 17 SMRT cells))
|
| Line 5: | |||
| We randomly selected four, six and eight SMRT cells three times for each, and access the correctness by Quast. | We randomly selected four, six and eight SMRT cells three times for each, and access the correctness by Quast. | ||
| - | ==Performance== | + | ==Assembly== |
| {| {{table}} border="1" | {| {{table}} border="1" | ||
| | align="center" style="background:#f0f0f0;"|'''Statistics without reference ''' | | align="center" style="background:#f0f0f0;"|'''Statistics without reference ''' | ||
| Line 56: | |||
| - | ==Discard Unconvincing Contigs== | + | ==Postprocess by discard unconvincing contigs== |
| We aligned subreads to contigs, and discarded the contigs with fewer than 100 reads aligned. | We aligned subreads to contigs, and discarded the contigs with fewer than 100 reads aligned. | ||
| - | ===Performance=== | ||
| {| {{table}} border="1" | {| {{table}} border="1" | ||
| | align="center" style="background:#f0f0f0;"|'''Statistics without reference ''' | | align="center" style="background:#f0f0f0;"|'''Statistics without reference ''' | ||
| Line 106: | |||
| - | ==Discard Lower-case bases == | + | ==Postprocess by discarding lower-case bases == |
| After discarding unconvincing contigs, we discarded low quality bases which present in lower-case from contigs two-side ends. | After discarding unconvincing contigs, we discarded low quality bases which present in lower-case from contigs two-side ends. | ||
| - | ===Performance=== | ||
| {| {{table}} border="1" | {| {{table}} border="1" | ||
| | align="center" style="background:#f0f0f0;"|'''Statistics without reference ''' | | align="center" style="background:#f0f0f0;"|'''Statistics without reference ''' | ||