Version Differences for How to
| Line 1: | |||
| + | = pacbioToCA = | ||
| + | =192221= | ||
| + | pacBioToCA -l viaMiseq -s pacbio.spec -t 10 -partitions 200 fastqFile=m120228_192221.fastq genomeSize=4650000 ../../tMiSeq_PE.frg | ||
| + | m120228_192221_42129_c100298890010000001523009207231260_s1_p0.fastq | ||
| + | seqs amount:38542 | ||
| + | seq avg len:2322.679985 | ||
| + | total:89.52 Mb | ||
| + | depth: 19.25X | ||
| + | (without genomeSize)PacBio_Illumia.fasta | ||
| + | seqs amount:34981 | ||
| + | seq avg len:2133.783826 | ||
| + | total:74.64 Mb | ||
| + | depth: 16.05X | ||
| + | 4650000 | ||
| + | viaMiseq.fasta | ||
| + | seqs amount:34852 | ||
| + | seq avg len:2130.841559 | ||
| + | total:74.26 Mb | ||
| + | depth: 15.97X => 看起來在只有一組的情況下，沒有差很多 | ||
| + | =210845= | ||
| + | pacBioToCA -l viaMiseq -s pacbio.spec -t 10 -partitions 200 fastqFile=m120228_210845.fastq genomeSize=4650000 ../../tMiSeq_PE.frg | ||
| + | m120228_210845_42129_c000304152550000001500000112311370_s1_p0.fastq | ||
| + | seqs amount:44794 | ||
| + | seq avg len:2334.414140 | ||
| + | total:104.57 Mb | ||
| + | depth: 22.49X | ||
| + | (without genomeSize)PacBio_Illumia.fasta | ||
| + | seqs amount:40666 | ||
| + | seq avg len:2124.597010 | ||
| + | total:86.40 Mb | ||
| + | depth: 18.58X | ||
| + | 4650000 | ||
| + | viaMiseq.fasta | ||
| + | seqs amount:40486 | ||
| + | seq avg len:2120.237712 | ||
| + | total:85.84 Mb | ||
| + | depth: 18.46X => 看起來在只有一組的情況下，沒有差很多 | ||
| + | =Random Get Two= | ||
| + | pacBioToCA -l viaMiseq -s pacbio.spec -t 10 -partitions 200 fastqFile=Filtered_two.fastq genomeSize=4650000 ../tMiSeq_PE.frg | ||
| + | Filtered_two.fastq | ||
| + | seqs amount:77117 | ||
| + | seq avg len:2184.208709 | ||
| + | total:168.44 Mb | ||
| + | depth: 36.22X | ||
| + | (without genomeSize)PacBio_Illumia.fasta | ||
| + | seqs amount:63760 | ||
| + | seq avg len:2199.845561 | ||
| + | total:140.26 Mb | ||
| + | depth: 30.16X | ||
| + | 4650000 | ||
| + | viaMiseq.fasta | ||
| + | seqs amount:63411 | ||
| + | seq avg len:2198.455315 | ||
| + | total:139.41 Mb | ||
| + | depth: 29.98X => 看起來在只有二組的情況下，沒有差很多 | ||
| + | =Random Get Three= | ||
| + | pacBioToCA -l viaMiseq -s pacbio.spec -t 10 -partitions 200 fastqFile=Filtered_three.fastq genomeSize=4650000 ../tMiSeq_PE.frg | ||
| + | Filtered_three.fastq | ||
| + | seqs amount:113284 | ||
| + | seq avg len:2333.977711 | ||
| + | total:264.40 Mb | ||
| + | depth: 56.86X | ||
| + | PacBio_Illumia.fasta | ||
| + | seqs amount:98165 | ||
| + | seq avg len:2286.482249 | ||
| + | total:224.45 Mb | ||
| + | depth: 48.27X | ||
| + | 4650000 | ||
| + | viaMiseq.fasta | ||
| + | seqs amount:70468 | ||
| + | seq avg len:2815.903020 | ||
| + | total:198.43 Mb | ||
| + | depth: 42.67X => 看起來要有三組以上的的情況下，genomeSize才有效果。 | ||
| + | =Random Get Four= | ||
| + | pacBioToCA -l viaMiseq -s pacbio.spec -t 10 -partitions 200 fastqFile=Filtered_four.fastq genomeSize=4650000 ../tMiSeq_PE.frg | ||
| + | Filtered_four.fastq | ||
| + | seqs amount:136333 | ||
| + | seq avg len:2386.664674 | ||
| + | total:325.38 Mb | ||
| + | depth: 69.97X | ||
| + | PacBio_Illumia.fasta | ||
| + | seqs amount:118901 | ||
| + | seq avg len:2320.548322 | ||
| + | total:275.92 Mb | ||
| + | depth: 59.34X | ||
| + | 4650000 | ||
| + | viaMiseq.fasta | ||
| + | seqs amount:56298 | ||
| + | seq avg len:3495.604515 | ||
| + | total:196.80 Mb | ||
| + | depth: 42.32X => 看起來要有三組以上的的情況下，genomeSize才有效果。 | ||
| = runCA = | = runCA = | ||
| [[Media:asm.spec|asm.spec used by us.]] | [[Media:asm.spec|asm.spec used by us.]] | ||