Version Differences for How to

Line 1:
  = pacbioToCA =    = pacbioToCA = 
- ==192221==   + [Summary]  
    + pacbioToCA estimates genome_size, It's will get exact genome_size without genome_size parameter when there are only one or two SMRT cell.  
    + When amount of SMRT cell is bigger than 2, pacbioToCA with genome_size parameter will halp it get exact genome_size.  
       
    + ==Random Get One==  
  pacBioToCA -l viaMiseq -s pacbio.spec -t 10 -partitions 200 fastqFile=m120228_192221.fastq genomeSize=4650000 ../../tMiSeq_PE.frg    pacBioToCA -l viaMiseq -s pacbio.spec -t 10 -partitions 200 fastqFile=m120228_192221.fastq genomeSize=4650000 ../../tMiSeq_PE.frg 
       
Line 22:
  depth: 15.97X => 看起來在只有一組的情況下，沒有差很多    depth: 15.97X => 看起來在只有一組的情況下，沒有差很多 
       
- ==210845==   + ==Random Get Two==  
- pacBioToCA -l viaMiseq -s pacbio.spec -t 10 -partitions 200 fastqFile=m120228_210845.fastq genomeSize=4650000 ../../tMiSeq_PE.frg      
- m120228_210845_42129_c000304152550000001500000112311370_s1_p0.fastq      
- seqs amount:44794      
- seq avg len:2334.414140      
- total:104.57 Mb      
- depth: 22.49X      
       
- (without genomeSize)PacBio_Illumia.fasta      
- seqs amount:40666      
- seq avg len:2124.597010      
- total:86.40 Mb      
- depth: 18.58X      
       
- 4650000      
- viaMiseq.fasta      
- seqs amount:40486      
- seq avg len:2120.237712      
- total:85.84 Mb      
- depth: 18.46X => 看起來在只有一組的情況下，沒有差很多      
       
- =Random Get Two=      
  pacBioToCA -l viaMiseq -s pacbio.spec -t 10 -partitions 200 fastqFile=Filtered_two.fastq genomeSize=4650000 ../tMiSeq_PE.frg    pacBioToCA -l viaMiseq -s pacbio.spec -t 10 -partitions 200 fastqFile=Filtered_two.fastq genomeSize=4650000 ../tMiSeq_PE.frg 
  Filtered_two.fastq    Filtered_two.fastq 
Line 64:
  depth: 29.98X => 看起來在只有二組的情況下，沒有差很多    depth: 29.98X => 看起來在只有二組的情況下，沒有差很多 
       
- =Random Get Three=   + ==Random Get Three==  
  pacBioToCA -l viaMiseq -s pacbio.spec -t 10 -partitions 200 fastqFile=Filtered_three.fastq genomeSize=4650000 ../tMiSeq_PE.frg    pacBioToCA -l viaMiseq -s pacbio.spec -t 10 -partitions 200 fastqFile=Filtered_three.fastq genomeSize=4650000 ../tMiSeq_PE.frg 
  Filtered_three.fastq    Filtered_three.fastq 
Line 85:
  depth: 42.67X => 看起來要有三組以上的的情況下，genomeSize才有效果。    depth: 42.67X => 看起來要有三組以上的的情況下，genomeSize才有效果。 
       
- =Random Get Four=   + ==Random Get Four==  
  pacBioToCA -l viaMiseq -s pacbio.spec -t 10 -partitions 200 fastqFile=Filtered_four.fastq genomeSize=4650000 ../tMiSeq_PE.frg    pacBioToCA -l viaMiseq -s pacbio.spec -t 10 -partitions 200 fastqFile=Filtered_four.fastq genomeSize=4650000 ../tMiSeq_PE.frg 
  Filtered_four.fastq    Filtered_four.fastq