Version Differences for PBcR

| align="center" style="background:#f0f0f0;"|'''6 SMRT cells : 3rd Set'''

|-

-

|# contigs||[[Media:pbcr_d6_all.fa | 2]]||[[Media:pbcr_d6_rg4_1.fa | 8]]||[[Media:pbcr_d6_rg4_2.fa | 10]]||[[Media:pbcr_d6_rg4_3.fa | 14]]||[[Media:pbcr_d6_rg6_1.fa | 1]]||[[Media:pbcr_d6_rg6_2.fa | 1]]||[[Media:pbcr_d6_rg6_3.fa | 4]]

+

|# contigs||[[Media:pbcr_d6_all.fa | 4]]||[[Media:pbcr_d6_rg4_1.fa | 52]]||[[Media:pbcr_d6_rg4_2.fa | 44]]||[[Media:pbcr_d6_rg4_3.fa | 76]]||[[Media:pbcr_d6_rg6_1.fa | 6]]||[[Media:pbcr_d6_rg6_2.fa | 6]]||[[Media:pbcr_d6_rg6_3.fa | 3]]

|-

-

|Largest contig||4 278 957||2 277 010||1 213 670||984 459||4 641 350||4 640 250||3 162 440

+

|Largest contig||3161528 300351 500181 250537 2045299 2044231 3622857

|-

-

|Total length||4 650 771||4 648 304||4 644 602||4 656 274||4 641 350||4 640 250||4 653 394

+

|Total length||4662182 4441307 4483671 4298734 4637078 4631147 4635596

|-

-

|N50||4 278 957||622 425||800 993||565 251||4 641 350||4 640 250||3 162 440

+

|N50||3161528 93960 113089 63438 1293638 1522515 3622857

|-

| style="background:#f0f0f0;"| [[Media:SCA_d6.pdf | '''Misassemblies''']]||||||||||||||

-

|# misassemblies||9||9||9||8||8||8||9

+

|# misassemblies||8 6 7 7 7 7 8

|-

-

|Misassembled contigs length ||4 278 957||2 809 129||2 085 482||1 947 163||4 641 350||4 640 250||3 209 090

+

|Misassembled contigs length ||3161528 678927 950772 526030 3567978 3566746 3622857

|-

| style="background:#f0f0f0;"| '''Mismatches'''||||||||||||||

-

|# mismatches per 100kbp||0.37||2.49||1.88||5.38||0.69||0.67||0.86

+

|# mismatches per 100kbp||0.32 1.56 1.63 3.36 0.37 0.19 0.35

|-

-

|# indels per 100kbp||3.58||53.34||45.82||73.07||10.65||11.28||10.46

+

|# indels per 100kbp||4.270 55.84 39.54 66.83 10.58 9.68 10.92

|-

-

|# N's per 100kbp ||0||0.04||0.02||0.09||0||0||0

+

|# N's per 100kbp ||0||0||0||0||0||0||0

|-

| style="background:#f0f0f0;"| '''Genome Statistics'''||||||||||||||

-

|Genome fraction(%) ||99.993||99.733||99.67||99.693||99.972||99.946||99.968

+

|Genome fraction(%) ||99.938 95.614 96.642 92.463 99.831 99.757 99.862

|-

-

|Duplication ratio ||1.002||1.005||1.006||1.007||1.001||1.001||1.003

+

|Duplication ratio ||1.005 1.001 1 1.002 1.001 1.001 1.001

|-

-

|# genes ||4492+5 part||4475+10 part||4467+12 part||4469+13 part||4492+4 part||4491+4 part||4492+4 part

+

|# genes ||4490 + 5 part 4230 + 70 part 4293 + 65 part 4105 + 105 part 4481 + 10 part 4474 + 12 part 4487 + 6 part

|-

-

|NGA50 ||859 464||621 281||572 455||436 292||1 098 529||1 096 784||859 502

+

|NGA50 ||702757 89630 111935 53224 857595 857662 910332

|-

| align="left" style="background:#f0f0f0;"|''' Running Time '''||2hr 9m||28m 59s||33m 32s||32m 21s||50m 17s||38m 36s||11m22s

 | align="center" style="background:#f0f0f0;"|'''6 SMRT cells : 3rd Set'''
 |-
-								|# contigs||[[Media:pbcr_d6_all.fa | 2]]||[[Media:pbcr_d6_rg4_1.fa | 8]]||[[Media:pbcr_d6_rg4_2.fa | 10]]||[[Media:pbcr_d6_rg4_3.fa | 14]]||[[Media:pbcr_d6_rg6_1.fa | 1]]||[[Media:pbcr_d6_rg6_2.fa | 1]]||[[Media:pbcr_d6_rg6_3.fa | 4]]
+								|# contigs||[[Media:pbcr_d6_all.fa | 4]]||[[Media:pbcr_d6_rg4_1.fa | 52]]||[[Media:pbcr_d6_rg4_2.fa | 44]]||[[Media:pbcr_d6_rg4_3.fa | 76]]||[[Media:pbcr_d6_rg6_1.fa | 6]]||[[Media:pbcr_d6_rg6_2.fa | 6]]||[[Media:pbcr_d6_rg6_3.fa | 3]]
 |-
-								|Largest contig||4 278 957||2 277 010||1 213 670||984 459||4 641 350||4 640 250||3 162 440
+								|Largest contig||3161528	300351	500181	250537	2045299	2044231	3622857
 |-
-								|Total length||4 650 771||4 648 304||4 644 602||4 656 274||4 641 350||4 640 250||4 653 394
+								|Total length||4662182	4441307	4483671	4298734	4637078	4631147	4635596
 |-
-								|N50||4 278 957||622 425||800 993||565 251||4 641 350||4 640 250||3 162 440
+								|N50||3161528	93960	113089	63438	1293638	1522515	3622857
 |-
 | style="background:#f0f0f0;"| [[Media:SCA_d6.pdf | '''Misassemblies''']]||||||||||||||
-								|# misassemblies||9||9||9||8||8||8||9
+								|# misassemblies||8	6	7	7	7	7	8
 |-
-								|Misassembled contigs length ||4 278 957||2 809 129||2 085 482||1 947 163||4 641 350||4 640 250||3 209 090
+								|Misassembled contigs length ||3161528	678927	950772	526030	3567978	3566746	3622857
 |-
 | style="background:#f0f0f0;"| '''Mismatches'''||||||||||||||
-								|# mismatches per 100kbp||0.37||2.49||1.88||5.38||0.69||0.67||0.86
+								|# mismatches per 100kbp||0.32	1.56	1.63	3.36	0.37	0.19	0.35
 |-
-								|# indels per 100kbp||3.58||53.34||45.82||73.07||10.65||11.28||10.46
+								|# indels per 100kbp||4.270	55.84	39.54	66.83	10.58	9.68	10.92
 |-
-								|# N's per 100kbp ||0||0.04||0.02||0.09||0||0||0
+								|# N's per 100kbp ||0||0||0||0||0||0||0
 |-
 | style="background:#f0f0f0;"| '''Genome Statistics'''||||||||||||||
-								|Genome fraction(%) ||99.993||99.733||99.67||99.693||99.972||99.946||99.968
+								|Genome fraction(%) ||99.938	95.614	96.642	92.463	99.831	99.757	99.862
 |-
-								|Duplication ratio ||1.002||1.005||1.006||1.007||1.001||1.001||1.003
+								|Duplication ratio ||1.005	1.001	1	1.002	1.001	1.001	1.001
 |-
-								|# genes ||4492+5 part||4475+10 part||4467+12 part||4469+13 part||4492+4 part||4491+4 part||4492+4 part
+								|# genes ||4490 + 5 part	4230 + 70 part	4293 + 65 part	4105 + 105 part	4481 + 10 part	4474 + 12 part	4487 + 6 part
 |-
-								|NGA50 ||859 464||621 281||572 455||436 292||1 098 529||1 096 784||859 502
+								|NGA50 ||702757	89630	111935	53224	857595	857662	910332
 |-
 | align="left" style="background:#f0f0f0;"|''' Running Time '''||2hr 9m||28m 59s||33m 32s||32m 21s||50m 17s||38m 36s||11m22s