Version Differences for PBcR
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(→0.8)
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(→wgs-8.2beta Performance)
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| Line 705: | |||
| PBcR -pbCNS -length 500 -partitions 200 -l p4c2 -s pacbio.spec -fastq filtered_subreads.fastq genomeSize=4650000 | PBcR -pbCNS -length 500 -partitions 200 -l p4c2 -s pacbio.spec -fastq filtered_subreads.fastq genomeSize=4650000 | ||
| - | ==wgs-8.2beta Performance== | ||
| - | {| {{table}} border="1" | ||
| - | | align="center" style="background:#f0f0f0;"|'''Statistics without reference ''' | ||
| - | | align="center" style="background:#f0f0f0;"|'''All Data''' | ||
| - | |- | ||
| - | |# contigs||[[Media:pbcr_pipeline_d9.fa |2]] | ||
| - | |- | ||
| - | |Largest contig||4 644 060 | ||
| - | |- | ||
| - | |Total length||4 652 830 | ||
| - | |- | ||
| - | |N50||4 644 060 | ||
| - | |- | ||
| - | | style="background:#f0f0f0;"| [[Media: pbcr_pipeline_d9.pdf | '''Misassemblies''']]|| | ||
| - | |- | ||
| - | |# misassemblies||8 | ||
| - | |- | ||
| - | |Misassembled contigs length ||4 644 060 | ||
| - | |- | ||
| - | | style="background:#f0f0f0;"| '''Mismatches'''|| | ||
| - | |- | ||
| - | |# mismatches per 100kbp||0.17 | ||
| - | |- | ||
| - | |# indels per 100kbp||31.7 | ||
| - | |- | ||
| - | |# N's per 100kbp ||0 | ||
| - | |- | ||
| - | | style="background:#f0f0f0;"| '''Genome Statistics'''|| | ||
| - | |- | ||
| - | |Genome fraction(%) ||100 | ||
| - | |- | ||
| - | |Duplication ratio ||1.003 | ||
| - | |- | ||
| - | |# genes ||4494+3 part | ||
| - | |- | ||
| - | |NGA50 ||3 025 484 | ||
| - | |- | ||
| - | | style="background:#f0f0f0;"| '''Running time'''|| | ||
| - | |- | ||
| - | |Running time|| 23m | ||
| - | |} | ||