Version Differences for PBcR
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(→with genomeSize)
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(→with genomeSize)
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| Line 609: | |||
| |# contigs||[[Media:pbcr_d6_all.fa | 1]]||[[Media:pbcr_d6_rg4_1.fa | 1]]||[[Media:pbcr_d6_rg4_2.fa | 1]]||[[Media:pbcr_d6_rg4_3.fa | 1]]||[[Media:pbcr_d6_rg6_1.fa | 1]] | |# contigs||[[Media:pbcr_d6_all.fa | 1]]||[[Media:pbcr_d6_rg4_1.fa | 1]]||[[Media:pbcr_d6_rg4_2.fa | 1]]||[[Media:pbcr_d6_rg4_3.fa | 1]]||[[Media:pbcr_d6_rg6_1.fa | 1]] | ||
| |- | |- | ||
| - | |Largest contig||1||1||1||1||1 | + | |Largest contig||3100062||3100061||3100039||3100030||3100027 |
| |- | |- | ||
| |Total length||3100062||3100061||3100039||3100030||3100027 | |Total length||3100062||3100061||3100039||3100030||3100027 | ||
| Line 615: | |||
| - | |N50||3 100 062||3 099 663||3 099 663||3 098 784||3 099 602 | + | |N50||3100062||3100061||3100039||3100030||3100027 |
| |- | |- | ||
| | style="background:#f0f0f0;"| [[Media:SCA_d6.pdf | '''Misassemblies''']]|||||||||| | | style="background:#f0f0f0;"| [[Media:SCA_d6.pdf | '''Misassemblies''']]|||||||||| | ||
| Line 623: | |||
| | style="background:#f0f0f0;"| '''Mismatches'''|||||||||| | | style="background:#f0f0f0;"| '''Mismatches'''|||||||||| | ||
| |- | |- | ||
| - | |# mismatches per 100kbp||0.03||0.06||0.06||0.03||0.03 | + | |# mismatches per 100kbp|0.03||0.03||0.03||0.03||0.13 |
| |- | |- | ||
| - | |# indels per 100kbp||13.53||20.47||20.47||19.95||20.7 | + | |# indels per 100kbp||13.53||13.43||13.46||13.92||13.82 |
| |- | |- | ||
| |# N's per 100kbp ||0||0||0||0||0 | |# N's per 100kbp ||0||0||0||0||0 | ||
| Line 637: | |||
| |# genes ||3103 + 2part||3103 +2 part||3103 +2 part||3103 +2 part||3103 +2 part | |# genes ||3103 + 2part||3103 +2 part||3103 +2 part||3103 +2 part||3103 +2 part | ||
| |- | |- | ||
| - | |NGA50 ||3 100 062||3 099 663||3 099 663||3 098 784||3 099 602 | + | |NGA50 ||3100062||3100061||3100039||3100030||3100027 |
| |- | |- | ||
| - | | align="left" style="background:#f0f0f0;"|''' Running Time '''||35m 5s||17m 43s||18m 14s||16m 12s||26m 17s | + | | align="left" style="background:#f0f0f0;"|''' Running Time '''||34m 23s||34m 5s||41m||34m 12s||43m 56s |
| |} | |} | ||
| =Dataset 8 (''P. heparinus'' DSM1279, 7 SMRT cells)= | =Dataset 8 (''P. heparinus'' DSM1279, 7 SMRT cells)= | ||