Version Differences for PBcR

(→Performance)
(→Performance)
Line 655:
  |# contigs||[[Media:pbcr_d6_all.fa | 2]]||[[Media:pbcr_d6_rg4_1.fa | 51]]||[[Media:pbcr_d6_rg4_2.fa | 44]]||[[Media:pbcr_d6_rg4_3.fa | 76]]    |# contigs||[[Media:pbcr_d6_all.fa | 2]]||[[Media:pbcr_d6_rg4_1.fa | 51]]||[[Media:pbcr_d6_rg4_2.fa | 44]]||[[Media:pbcr_d6_rg4_3.fa | 76]] 
  |-     |-  
- |Largest contig||3 835 938||300 354||500 180||250 542   + |Largest contig||5163845||5163749||5163778||5163424  
  |-    |- 
- |Total length||4 640 874||4 437 792||4 476 210||4 297 112   + |Total length||5173098||5172988||5172966||5172677  
  |-    |- 
- |N50||3 835 938||105 841||117 447||69 771   + |N50||5163845||5163749||5163778||5163424  
  |-    |- 
  | style="background:#f0f0f0;"| [[Media:SCA_d6.pdf | '''Misassemblies''']]||||||||    | style="background:#f0f0f0;"| [[Media:SCA_d6.pdf | '''Misassemblies''']]|||||||| 
Line 665:
- |# misassemblies||8||6||7||6   + |# misassemblies||1||1||1||0  
  |-    |- 
- |Misassembled contigs length ||3 835 938||678 934||950 771||435 912   + |Misassembled contigs length ||5163845||5163749||5163778||0  
  |-    |- 
  | style="background:#f0f0f0;"| '''Mismatches'''||||||||    | style="background:#f0f0f0;"| '''Mismatches'''|||||||| 
Line 671:
- |# mismatches per 100kbp||0.19||1.65||1.61||3.74   + |# mismatches per 100kbp||5.84||5.17||3.37||3.54  
  |-    |- 
- |# indels per 100kbp||4.81||56.36||39.36||65.58   + |# indels per 100kbp||0.56||1.03||0.97||2.24  
  |-    |- 
  |# N's per 100kbp ||0||0||0||0    |# N's per 100kbp ||0||0||0||0 
Line 677:
  | style="background:#f0f0f0;"| '''Genome Statistics'''||||||||    | style="background:#f0f0f0;"| '''Genome Statistics'''|||||||| 
  |-    |- 
- |Genome fraction(%) ||99.938||95.61||96.483||92.288   + |Genome fraction(%) ||100||100||100||100  
  |-    |- 
- |Duplication ratio ||1.001||1.005||1.006||1.007   + |Duplication ratio ||1.002||1.002||1.002||1.001  
  |-    |- 
- |# genes ||4490 +5 part||4229 +71 part||4288 +65 part||4094 +105 part   + |# genes ||4338 +1 part||4338 +1 part||4338 +1 part||4338 +1 part  
  |-    |- 
- |NGA50 ||949 276||89 654||111 935||53 222   + |NGA50 ||2926366||2926293||2926326||5163424  
  |-    |- 
- | align="left" style="background:#f0f0f0;"|''' Running Time '''||35m 5s||17m 43s||18m 14s||16m 12s   + | align="left" style="background:#f0f0f0;"|''' Running Time '''||1hr 11m||53m 55s||54m 57s||57m 8s  
  |}    |} 
       
       
       
    + ===  
       
  {| {{table}} border="1"    {| {{table}} border="1"