Version Differences for PBcR

(→2)
(→3)
Line 785:
  =3=    =3= 
       
    + genomeSize= 5170000 bp  
       
  {| {{table}} border="1"    {| {{table}} border="1" 
  | align="center" style="background:#f0f0f0;"|'''Statistics without reference '''    | align="center" style="background:#f0f0f0;"|'''Statistics without reference ''' 
Line 792:
  | align="center" style="background:#f0f0f0;"|'''4 SMRT cells : 3rd Set'''    | align="center" style="background:#f0f0f0;"|'''4 SMRT cells : 3rd Set''' 
  |-    |- 
- |# contigs||[[Media: pbcr_d8_all.fa | 1]]||[[Media: pbcr_d8_rg4_1.fa | 3]]||[[Media: pbcr_d8_rg4_2.fa | 3]]||[[Media: pbcr_d8_rg4_3.fa | 3]]   + |# contigs||[[Media: pbcr_d8_all.fa | 2]]||[[Media: pbcr_d8_rg4_1.fa | 16]]||[[Media: pbcr_d8_rg4_2.fa | 10]]||[[Media: pbcr_d8_rg4_3.fa | 15]]  
  |-    |- 
- |Largest contig||5 163 983||2 232 679||2 236 613||2 237 949   + |Largest contig||5163845||2233572||2243053||2214015  
  |-    |- 
- |Total length||5 163 983||5 161 276||5 165 518||5 166 563   + |Total length||5173098||5172051||5169489||5172101  
  |-    |- 
- |N50||5 163 983||2 043 590||2 044 147||2 135 225   + |N50||5163845||1382071||1271605||1392430  
  |-    |- 
  | style="background:#f0f0f0;"| [[Media:sca_d8.pdf | '''Misassemblies''']]||||||||    | style="background:#f0f0f0;"| [[Media:sca_d8.pdf | '''Misassemblies''']]|||||||| 
Line 804:
- |# misassemblies||0||0||0||0   + |# misassemblies||1||0||1||0  
  |-    |- 
- |Misassembled contigs length ||0||0||0||0   + |Misassembled contigs length ||5163845||0||2243053||0  
  |-    |- 
  | style="background:#f0f0f0;"| '''Mismatches'''||||||||    | style="background:#f0f0f0;"| '''Mismatches'''|||||||| 
Line 810:
- |# mismatches per 100kbp||8.41||9.960||8.27||10.29   + |# mismatches per 100kbp||3.87||8.41||6.87||8.18  
  |-    |- 
- |# indels per 100kbp||2.19||18.99||13.13||14.01   + |# indels per 100kbp||0.52||7.54||5.59||5.52  
  |-    |- 
  |# N's per 100kbp ||0||0||0||0    |# N's per 100kbp ||0||0||0||0 
Line 816:
  | style="background:#f0f0f0;"| '''Genome Statistics'''||||||||    | style="background:#f0f0f0;"| '''Genome Statistics'''|||||||| 
  |-    |- 
- |Genome fraction(%) ||99.919||99.864||99.907||99.89   + |Genome fraction(%) ||100||99.808||99.977||99.864  
  |-    |- 
- |Duplication ratio ||1||1||1.001||1.001   + |Duplication ratio ||1.002||1.003||1.002||1.002  
  |-    |- 
- |# genes ||4335+3 part||4330+5 part||4333+5 part||4333+3 part   + |# genes ||4338 + 1 part||4319 + 17 part||4329 + 10 part||4321 + 15 part  
  |-    |- 
- |NGA50 ||5 163 983 532||2 043 590||2 044 147||2 135 225   + |NGA50 ||2926365||1382071||1271604||1392430  
  |-     |-  
- | style="background:#f0f0f0;"| '''Running Time'''||||||||   + |align="left" style="background:#f0f0f0;"|''' Running Time '''||58m||33m 10s||33m 51s||33m 36s  
- |-      
- |pacBioToCA||18hr 55m||6hr 27m||6hr 34m||6hr 31m      
- |-      
- |runCA||21hr 36m||11hr 39m||12hr 26m||12hr 12m      
- |-      
- |Total||40hr 31m||18hr 06m||19hr 00n||18hr 43m      
  |}    |} 
  [[Media: sca_d8_summary.pdf | '''Misassemblies''']] for Adobe reader.    [[Media: sca_d8_summary.pdf | '''Misassemblies''']] for Adobe reader.