Version Differences for PBcR
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(→1)
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(→1)
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| Line 700: | |||
| | align="center" style="background:#f0f0f0;"|'''4 SMRT cells : 3rd Set''' | | align="center" style="background:#f0f0f0;"|'''4 SMRT cells : 3rd Set''' | ||
| |- | |- | ||
| - | |# contigs||[[Media: pbcr_d8_all.fa | 2]]||[[Media: pbcr_d8_rg4_1.fa | 16]]||[[Media: pbcr_d8_rg4_2.fa | 10]]||[[Media: pbcr_d8_rg4_3.fa | 15]] | + | |# contigs||[[Media: pbcr_d8_all.fa | 1]]||[[Media: pbcr_d8_rg4_1.fa | 13]]||[[Media: pbcr_d8_rg4_2.fa | 10]]||[[Media: pbcr_d8_rg4_3.fa | 12]] |
| |- | |- | ||
| |Largest contig||5163845||2233572||2243053||2214015 | |Largest contig||5163845||2233572||2243053||2214015 | ||
| Line 706: | |||
| - | |Total length||5173098||5172051||5169489||5172101 | + | |Total length||5163845||5144475||5169489||5153037 |
| |- | |- | ||
| - | |N50||5163845||1382071||1271605||1392430 | + | |N50||5163845||1382071||1271605||13924300 |
| |- | |- | ||
| | style="background:#f0f0f0;"| [[Media:sca_d8.pdf | '''Misassemblies''']]|||||||| | | style="background:#f0f0f0;"| [[Media:sca_d8.pdf | '''Misassemblies''']]|||||||| | ||
| Line 716: | |||
| | style="background:#f0f0f0;"| '''Mismatches'''|||||||| | | style="background:#f0f0f0;"| '''Mismatches'''|||||||| | ||
| |- | |- | ||
| - | |# mismatches per 100kbp||3.87||8.41||6.87||8.18 | + | |# mismatches per 100kbp||3.89||8.4||6.87||8.2 |
| |- | |- | ||
| - | |# indels per 100kbp||0.52||7.54||5.59||5.52 | + | |# indels per 100kbp||0.64||7.23||5.59||5.44 |
| |- | |- | ||
| |# N's per 100kbp ||0||0||0||0 | |# N's per 100kbp ||0||0||0||0 | ||
| Line 724: | |||
| | style="background:#f0f0f0;"| '''Genome Statistics'''|||||||| | | style="background:#f0f0f0;"| '''Genome Statistics'''|||||||| | ||
| |- | |- | ||
| - | |Genome fraction(%) ||100||99.808||99.977||99.864 | + | |Genome fraction(%) ||99.945||99.548||99.977||99.643 |
| |- | |- | ||
| - | |Duplication ratio ||1.002||1.003||1.002||1.002 | + | |Duplication ratio ||1.001||1||1.002||1.001 |
| |- | |- | ||
| - | |# genes ||4338 + 1 part||4319 + 17 part||4329 + 10 part||4321 + 15 part | + | |# genes ||4336 + 2 part||4309 + 18 part||4329 + 10 part||4312 + 16 part |
| |- | |- | ||
| |NGA50 ||2926365||1382071||1271604||1392430 | |NGA50 ||2926365||1382071||1271604||1392430 | ||