Version Differences for PBcR

(→1)
(→2)
Line 747:
  | align="center" style="background:#f0f0f0;"|'''4 SMRT cells : 3rd Set'''    | align="center" style="background:#f0f0f0;"|'''4 SMRT cells : 3rd Set''' 
  |-    |- 
- |# contigs||[[Media: pbcr_d8_all.fa | 2]]||[[Media: pbcr_d8_rg4_1.fa | 16]]||[[Media: pbcr_d8_rg4_2.fa | 10]]||[[Media: pbcr_d8_rg4_3.fa | 15]]   + |# contigs||[[Media: pbcr_d8_all.fa | 1]]||[[Media: pbcr_d8_rg4_1.fa | 31]]||[[Media: pbcr_d8_rg4_2.fa | 30]]||[[Media: pbcr_d8_rg4_3.fa | 20]]  
  |-    |- 
- |Largest contig||5163845||2233572||2243053||2214015   + |Largest contig||5163845||1821377||2215586||2212632  
  |-    |- 
- |Total length||5173098||5172051||5169489||5172101   + |Total length||5163845||5024237||5108915||5089645  
  |-    |- 
- |N50||5163845||1382071||1271605||1392430   + |N50||5163845||360474||1272328||720504  
  |-    |- 
  | style="background:#f0f0f0;"| [[Media:sca_d8.pdf | '''Misassemblies''']]||||||||    | style="background:#f0f0f0;"| [[Media:sca_d8.pdf | '''Misassemblies''']]|||||||| 
Line 759:
- |# misassemblies||1||0||1||0   + |# misassemblies||1||0||0||0  
  |-    |- 
- |Misassembled contigs length ||5163845||0||2243053||0   + |Misassembled contigs length ||5163845||0||0||0  
  |-    |- 
  | style="background:#f0f0f0;"| '''Mismatches'''||||||||    | style="background:#f0f0f0;"| '''Mismatches'''|||||||| 
Line 765:
- |# mismatches per 100kbp||3.87||8.41||6.87||8.18   + |# mismatches per 100kbp||3.89||7.39||7.36||6.56  
  |-    |- 
- |# indels per 100kbp||0.52||7.54||5.59||5.52   + |# indels per 100kbp||0.68||12.09||10.82||9.33  
  |-    |- 
  |# N's per 100kbp ||0||0||0||0    |# N's per 100kbp ||0||0||0||0 
Line 771:
  | style="background:#f0f0f0;"| '''Genome Statistics'''||||||||    | style="background:#f0f0f0;"| '''Genome Statistics'''|||||||| 
  |-    |- 
- |Genome fraction(%) ||100||99.808||99.977||99.864   + |Genome fraction(%) ||99.945||97.19||98.871||98.476  
  |-    |- 
- |Duplication ratio ||1.002||1.003||1.002||1.002   + |Duplication ratio ||1.001||1||1||1  
  |-    |- 
- |# genes ||4338 + 1 part||4319 + 17 part||4329 + 10 part||4321 + 15 part   + |# genes ||4336 + 2 part||4182 + 45 part||4259 + 40 part||4252 + 28 part  
  |-    |- 
- |NGA50 ||2926365||1382071||1271604||1392430   + |NGA50 ||2926367||360474||1272327||720504  
  |-     |-  
- |align="left" style="background:#f0f0f0;"|''' Running Time '''||58m||33m 10s||33m 51s||33m 36s   + |align="left" style="background:#f0f0f0;"|''' Running Time '''||55m 29s||31m 47s||32m 44s||31m 4s  
  |}    |} 
  [[Media: sca_d8_summary.pdf | '''Misassemblies''']] for Adobe reader.    [[Media: sca_d8_summary.pdf | '''Misassemblies''']] for Adobe reader.