Version Differences for PBcR
|
(→2)
|
(→3)
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| Line 785: | |||
| =3= | =3= | ||
| - | genomeSize= 5170000 bp | + | genomeSize= 5687000 bp |
| {| {{table}} border="1" | {| {{table}} border="1" | ||
| Line 794: | |||
| | align="center" style="background:#f0f0f0;"|'''4 SMRT cells : 3rd Set''' | | align="center" style="background:#f0f0f0;"|'''4 SMRT cells : 3rd Set''' | ||
| |- | |- | ||
| - | |# contigs||[[Media: pbcr_d8_all.fa | 2]]||[[Media: pbcr_d8_rg4_1.fa | 16]]||[[Media: pbcr_d8_rg4_2.fa | 10]]||[[Media: pbcr_d8_rg4_3.fa | 15]] | + | |# contigs||[[Media: pbcr_d8_all.fa | 1]]||[[Media: pbcr_d8_rg4_1.fa | 13]]||[[Media: pbcr_d8_rg4_2.fa | 10]]||[[Media: pbcr_d8_rg4_3.fa | 12]] |
| |- | |- | ||
| - | |Largest contig||5163845||2233572||2243053||2214015 | + | |Largest contig||5163844||2233573||2243055||2214008 |
| |- | |- | ||
| - | |Total length||5173098||5172051||5169489||5172101 | + | |Total length||5163844||5145570||5169519||5159845 |
| |- | |- | ||
| - | |N50||5163845||1382071||1271605||1392430 | + | |N50||5163844||1382064||1271645||1392431 |
| |- | |- | ||
| | style="background:#f0f0f0;"| [[Media:sca_d8.pdf | '''Misassemblies''']]|||||||| | | style="background:#f0f0f0;"| [[Media:sca_d8.pdf | '''Misassemblies''']]|||||||| | ||
| Line 806: | |||
| |# misassemblies||1||0||1||0 | |# misassemblies||1||0||1||0 | ||
| |- | |- | ||
| - | |Misassembled contigs length ||5163845||0||2243053||0 | + | |Misassembled contigs length ||5163844||0||2243055||0 |
| |- | |- | ||
| | style="background:#f0f0f0;"| '''Mismatches'''|||||||| | | style="background:#f0f0f0;"| '''Mismatches'''|||||||| | ||
| Line 812: | |||
| - | |# mismatches per 100kbp||3.87||8.41||6.87||8.18 | + | |# mismatches per 100kbp||2.94||7.99||6.89||8.17 |
| |- | |- | ||
| - | |# indels per 100kbp||0.52||7.54||5.59||5.52 | + | |# indels per 100kbp||0.560||7.09||5.44||5.49 |
| |- | |- | ||
| |# N's per 100kbp ||0||0||0||0 | |# N's per 100kbp ||0||0||0||0 | ||
| Line 818: | |||
| | style="background:#f0f0f0;"| '''Genome Statistics'''|||||||| | | style="background:#f0f0f0;"| '''Genome Statistics'''|||||||| | ||
| |- | |- | ||
| - | |Genome fraction(%) ||100||99.808||99.977||99.864 | + | |Genome fraction(%) ||99.945||99.569||99.977||99.775 |
| |- | |- | ||
| - | |Duplication ratio ||1.002||1.003||1.002||1.002 | + | |Duplication ratio ||1.001||1||1.002||1.001 |
| |- | |- | ||
| - | |# genes ||4338 + 1 part||4319 + 17 part||4329 + 10 part||4321 + 15 part | + | |# genes ||4336 +2 part||4309 +18 part||4329 +10 part||4320 +15 part |
| |- | |- | ||
| - | |NGA50 ||2926365||1382071||1271604||1392430 | + | |NGA50 ||2926365||1382064||1271643||1392431 |
| |- | |- | ||
| - | |align="left" style="background:#f0f0f0;"|''' Running Time '''||58m||33m 10s||33m 51s||33m 36s | + | |align="left" style="background:#f0f0f0;"|''' Running Time '''||1hr 1m||42m 37s||44m 46s||42m 22s |
| |} | |} | ||
| [[Media: sca_d8_summary.pdf | '''Misassemblies''']] for Adobe reader. | [[Media: sca_d8_summary.pdf | '''Misassemblies''']] for Adobe reader. | ||