Version Differences for PBcR
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(→4)
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(→5)
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| Line 887: | |||
| |# contigs||[[Media: pbcr_d8_all.fa | 2]]||[[Media: pbcr_d8_rg4_1.fa | 16]]||[[Media: pbcr_d8_rg4_2.fa | 10]]||[[Media: pbcr_d8_rg4_3.fa | 15]] | |# contigs||[[Media: pbcr_d8_all.fa | 2]]||[[Media: pbcr_d8_rg4_1.fa | 16]]||[[Media: pbcr_d8_rg4_2.fa | 10]]||[[Media: pbcr_d8_rg4_3.fa | 15]] | ||
| |- | |- | ||
| - | |Largest contig||5163845||2233572||2243053||2214015 | + | |Largest contig||5163833 2233593 2243042 2214012 |
| |- | |- | ||
| - | |Total length||5173098||5172051||5169489||5172101 | + | |Total length|| 5163833 5156868 5169779 5159887 |
| |- | |- | ||
| - | |N50||5163845||1382071||1271605||1392430 | + | |N50||5163833 1382073 1271789 13924340 |
| |- | |- | ||
| | style="background:#f0f0f0;"| [[Media:sca_d8.pdf | '''Misassemblies''']]|||||||| | | style="background:#f0f0f0;"| [[Media:sca_d8.pdf | '''Misassemblies''']]|||||||| | ||
| Line 897: | |||
| |# misassemblies||1||0||1||0 | |# misassemblies||1||0||1||0 | ||
| |- | |- | ||
| - | |Misassembled contigs length ||5163845||0||2243053||0 | + | |Misassembled contigs length ||5163833 0 2243042 0 |
| |- | |- | ||
| | style="background:#f0f0f0;"| '''Mismatches'''|||||||| | | style="background:#f0f0f0;"| '''Mismatches'''|||||||| | ||
| Line 903: | |||
| - | |# mismatches per 100kbp||3.87||8.41||6.87||8.18 | + | |# mismatches per 100kbp||3.97 8.280 6.93 8.15 |
| |- | |- | ||
| - | |# indels per 100kbp||0.52||7.54||5.59||5.52 | + | |# indels per 100kbp||0.64 7.33 5.73 5.7 |
| |- | |- | ||
| - | |# N's per 100kbp ||0||0||0||0 | + | |# N's per 100kbp ||0 0 0 0 |
| |- | |- | ||
| | style="background:#f0f0f0;"| '''Genome Statistics'''|||||||| | | style="background:#f0f0f0;"| '''Genome Statistics'''|||||||| | ||
| Line 911: | |||
| - | |Genome fraction(%) ||100||99.808||99.977||99.864 | + | |Genome fraction(%) ||99.945 99.756 99.98 99.775 |
| |- | |- | ||
| - | |Duplication ratio ||1.002||1.003||1.002||1.002 | + | |Duplication ratio ||1.001 1 1.002 1.001 |
| |- | |- | ||
| - | |# genes ||4338 + 1 part||4319 + 17 part||4329 + 10 part||4321 + 15 part | + | |# genes ||4336 + 2 part 4316 + 18 part 4331 + 8 part 4320 + 15 part |
| |- | |- | ||
| - | |NGA50 ||2926365||1382071||1271604||1392430 | + | |NGA50 ||2926354 1382073 1271789 1392434 |
| |- | |- | ||
| |align="left" style="background:#f0f0f0;"|''' Running Time '''||58m||33m 10s||33m 51s||33m 36s | |align="left" style="background:#f0f0f0;"|''' Running Time '''||58m||33m 10s||33m 51s||33m 36s | ||