Version Differences for PBcR
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(→5)
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(→6)
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| Line 932: | |||
| | align="center" style="background:#f0f0f0;"|'''4 SMRT cells : 3rd Set''' | | align="center" style="background:#f0f0f0;"|'''4 SMRT cells : 3rd Set''' | ||
| |- | |- | ||
| - | |# contigs||[[Media: pbcr_d8_all.fa | 2]]||[[Media: pbcr_d8_rg4_1.fa | 14]]||[[Media: pbcr_d8_rg4_2.fa | 9]]||[[Media: pbcr_d8_rg4_3.fa | 12]] | + | |# contigs||[[Media: pbcr_d8_all.fa | 1]]||[[Media: pbcr_d8_rg4_1.fa | 1]]||[[Media: pbcr_d8_rg4_2.fa | 1]]||[[Media: pbcr_d8_rg4_3.fa | 1]] |
| |- | |- | ||
| - | |Largest contig||5163833||2233593||2243042||2214012 | + | |Largest contig||5164065||5163932||5163855||5163813 |
| |- | |- | ||
| - | |Total length|| 5163833||5156868||5169779||5159887 | + | |Total length||5164065||5163932||5163855||5163813 |
| |- | |- | ||
| - | |N50||5163833||1382073||1271789||13924340 | + | |N50||5164065||5163932||5163855||5163813 |
| |- | |- | ||
| | style="background:#f0f0f0;"| [[Media:sca_d8.pdf | '''Misassemblies''']]|||||||| | | style="background:#f0f0f0;"| [[Media:sca_d8.pdf | '''Misassemblies''']]|||||||| | ||
| Line 944: | |||
| - | |# misassemblies||1||0||1||0 | + | |# misassemblies||0||1||0||0 |
| |- | |- | ||
| - | |Misassembled contigs length ||5163833||0||2243042||0 | + | |Misassembled contigs length ||0||5163932||0||0 |
| |- | |- | ||
| | style="background:#f0f0f0;"| '''Mismatches'''|||||||| | | style="background:#f0f0f0;"| '''Mismatches'''|||||||| | ||
| Line 950: | |||
| - | |# mismatches per 100kbp||3.97||8.280||6.93||8.15 | + | |# mismatches per 100kbp||8.27||0.02||8.290||8.35 |
| |- | |- | ||
| - | |# indels per 100kbp||0.64||7.33||5.73||5.7 | + | |# indels per 100kbp||0.76||0.19||1.160||1.160 |
| |- | |- | ||
| |# N's per 100kbp ||0||0||0||0 | |# N's per 100kbp ||0||0||0||0 | ||
| Line 956: | |||
| | style="background:#f0f0f0;"| '''Genome Statistics'''|||||||| | | style="background:#f0f0f0;"| '''Genome Statistics'''|||||||| | ||
| |- | |- | ||
| - | |Genome fraction(%) ||99.945||99.756||99.98||99.775 | + | |Genome fraction(%) ||99.922||99.942||99.918||99.917 |
| |- | |- | ||
| - | |Duplication ratio ||1.001||1||1.002||1.001 | + | |Duplication ratio ||1||1.001||1||1 |
| |- | |- | ||
| - | |# genes ||4336 +2 part||4316 +18 part||4331 +8 part||4320 +15 part | + | |# genes ||4335 +3 part||4336 +2 part||4335 +3 part||4335 +3 part |
| |- | |- | ||
| - | |NGA50 ||2926354||1382073||1271789||1392434 | + | |NGA50 ||5164065||2926240||5163855||5163813 |
| |- | |- | ||
| - | |align="left" style="background:#f0f0f0;"|''' Running Time '''||1hr 19m||41m 3s||32m 30s||31m 16s | + | |align="left" style="background:#f0f0f0;"|''' Running Time '''||1hr 15m||1hr 14m||1hr 27m||1hr 24m |
| |} | |} | ||
| [[Media: sca_d8_summary.pdf | '''Misassemblies''']] for Adobe reader. | [[Media: sca_d8_summary.pdf | '''Misassemblies''']] for Adobe reader. | ||