Version Differences for PBcR

Revision as of 25 December 2014 05:06

(→Performance)

Revision as of 25 December 2014 05:07

(→Performance)

 with different genomeSize
 								{| {{table}} border="1"
 								| align="center" style="background:#f0f0f0;"|'''Statistics without reference '''
 								| align="center" style="background:#f0f0f0;"|'''genomeSize=3100000'''
 								| align="center" style="background:#f0f0f0;"|'''genomeSize=2790000'''
 								| align="center" style="background:#f0f0f0;"|'''genomeSize=3410000'''
 								| align="center" style="background:#f0f0f0;"|'''genomeSize=2480000'''
 								| align="center" style="background:#f0f0f0;"|'''genomeSize=3720000'''
 								|-
 								|# contigs||[[Media:pbcr_d6_all.fa | 1]]||[[Media:pbcr_d6_rg4_1.fa | 1]]||[[Media:pbcr_d6_rg4_2.fa | 1]]||[[Media:pbcr_d6_rg4_3.fa | 1]]||[[Media:pbcr_d6_rg6_1.fa | 1]]
 								|-
 								|Largest contig||3100062||3100061||3100039||3100030||3100027
 								|-
 								|Total length||3100062||3100061||3100039||3100030||3100027
 								|-
 								|N50||3100062||3100061||3100039||3100030||3100027
 								|-
 								| style="background:#f0f0f0;"| [[Media:SCA_d6.pdf | '''Misassemblies''']]||||||||||
 								|-
 								|# misassemblies||0||0||0||0||0
 								|-
 								|Misassembled contigs length ||0||0||0||0||0
 								|-
 								| style="background:#f0f0f0;"| '''Mismatches'''||||||||||
 								|-
 								|# mismatches per 100kbp||0.03||0.03||0.03||0.03||0.13
 								|-
 								|# indels per 100kbp||13.53||13.43||13.46||13.92||13.82
 								|-
 								|# N's per 100kbp ||0||0||0||0||0
 								|-
 								| style="background:#f0f0f0;"| '''Genome Statistics'''||||||||||
 								|-
 								|Genome fraction(%) ||99.986||99.986||99.986||99.986||99.986
 								|-
 								|Duplication ratio ||1.001||1.001||1.001||1.001||1.001
 								|-
 								|# genes ||3103 + 2part||3103 +2 part||3103 +2 part||3103 +2 part||3103 +2 part
 								|-
 								|NGA50 ||3100062||3100061||3100039||3100030||3100027
 								|-
 								| align="left" style="background:#f0f0f0;"|''' Running Time '''||34m 23s||34m 5s||41m||34m 12s||43m 56s
 								|}