(→Performance)
|
(→Performance)
|
Line 984: | |||
|# contigs||[[Media:pbcr_d6_all.fa | 1]]||[[Media:pbcr_d6_rg4_1.fa | 1]]||[[Media:pbcr_d6_rg4_2.fa | 1]]||[[Media:pbcr_d6_rg4_3.fa | 1]]||[[Media:pbcr_d6_rg6_1.fa | 1]] | |# contigs||[[Media:pbcr_d6_all.fa | 1]]||[[Media:pbcr_d6_rg4_1.fa | 1]]||[[Media:pbcr_d6_rg4_2.fa | 1]]||[[Media:pbcr_d6_rg4_3.fa | 1]]||[[Media:pbcr_d6_rg6_1.fa | 1]] | ||
|- | |- | ||
- | |Largest contig||3100062||3100061||3100039||3100030||3100027 | + | |Largest contig||4644061||4651184||4644056||4651207||4651348 |
|- | |- | ||
- | |Total length||3100062||3100061||3100039||3100030||3100027 | + | |Total length||4644061||4651184||4644056||4651207||4651348 |
|- | |- | ||
- | |N50||3100062||3100061||3100039||3100030||3100027 | + | |N50||4644061||4651184||4644056||4651207||4651348 |
|- | |- | ||
| style="background:#f0f0f0;"| [[Media:SCA_d6.pdf | '''Misassemblies''']]|||||||||| | | style="background:#f0f0f0;"| [[Media:SCA_d6.pdf | '''Misassemblies''']]|||||||||| | ||
Line 994: | |||
- | |# misassemblies||0||0||0||0||0 | + | |# misassemblies||8 8 8 8 8 |
|- | |- | ||
- | |Misassembled contigs length ||0||0||0||0||0 | + | |Misassembled contigs length ||4644061||4651184||4644056||4651207||4651348 |
|- | |- | ||
| style="background:#f0f0f0;"| '''Mismatches'''|||||||||| | | style="background:#f0f0f0;"| '''Mismatches'''|||||||||| | ||
Line 1000: | |||
- | |# mismatches per 100kbp||0.03||0.03||0.03||0.03||0.13 | + | |# mismatches per 100kbp||0.13||0.39||0.13||0.34||0.19 |
|- | |- | ||
- | |# indels per 100kbp||13.53||13.43||13.46||13.92||13.82 | + | |# indels per 100kbp||31.34||31.64||31.27||33.04||30.63 |
|- | |- | ||
|# N's per 100kbp ||0||0||0||0||0 | |# N's per 100kbp ||0||0||0||0||0 | ||
Line 1006: | |||
| style="background:#f0f0f0;"| '''Genome Statistics'''|||||||||| | | style="background:#f0f0f0;"| '''Genome Statistics'''|||||||||| | ||
|- | |- | ||
- | |Genome fraction(%) ||99.986||99.986||99.986||99.986||99.986 | + | |Genome fraction(%) ||100||99.998||100||99.998||100 |
|- | |- | ||
- | |Duplication ratio ||1.001||1.001||1.001||1.001||1.001 | + | |Duplication ratio ||1.001||1.003||1.001||1.003||1.003 |
|- | |- | ||
- | |# genes ||3103 + 2part||3103 +2 part||3103 +2 part||3103 +2 part||3103 +2 part | + | |# genes ||4494 + 3 part||4493 + 4 part||4494 + 3 part||4493 + 4 part||4494 +3 part |
|- | |- | ||
- | |NGA50 ||3100062||3100061||3100039||3100030||3100027 | + | |NGA50 ||3025485||960375||3025483||960380||960403 |
|- | |- | ||
| align="left" style="background:#f0f0f0;"|''' Running Time '''||34m 23s||34m 5s||41m||34m 12s||43m 56s | | align="left" style="background:#f0f0f0;"|''' Running Time '''||34m 23s||34m 5s||41m||34m 12s||43m 56s |