Version Differences for PBcR
|
(→Performance)
|
(→wait)
|
| Line 1019: | |||
| =wait= | =wait= | ||
| + | without genomeSize | ||
| {| {{table}} border="1" | {| {{table}} border="1" | ||
| | align="center" style="background:#f0f0f0;"|'''Statistics without reference ''' | | align="center" style="background:#f0f0f0;"|'''Statistics without reference ''' | ||
| Line 1026: | |||
| |# contigs||[[Media:pbcr_d9_all.fa |1]] | |# contigs||[[Media:pbcr_d9_all.fa |1]] | ||
| |- | |- | ||
| - | |Largest contig||4 656257 | + | |Largest contig||4651323 |
| |- | |- | ||
| - | |Total length||4 656 257 | + | |Total length||4651323 |
| |- | |- | ||
| - | |N50||4 656 257 | + | |N50||4651323 |
| |- | |- | ||
| | style="background:#f0f0f0;"| [[Media: SCA_D9.pdf | '''Misassemblies''']]|| | | style="background:#f0f0f0;"| [[Media: SCA_D9.pdf | '''Misassemblies''']]|| | ||
| Line 1036: | |||
| |# misassemblies||8 | |# misassemblies||8 | ||
| |- | |- | ||
| - | |Misassembled contigs length ||4 656 257 | + | |Misassembled contigs length ||4651323 |
| |- | |- | ||
| | style="background:#f0f0f0;"| '''Mismatches'''|| | | style="background:#f0f0f0;"| '''Mismatches'''|| | ||
| Line 1042: | |||
| - | |# mismatches per 100kbp||0.22 | + | |# mismatches per 100kbp||0.13 |
| |- | |- | ||
| - | |# indels per 100kbp||13.15 | + | |# indels per 100kbp||31.04 |
| |- | |- | ||
| |# N's per 100kbp ||0 | |# N's per 100kbp ||0 | ||
| Line 1050: | |||
| |Genome fraction(%) ||100 | |Genome fraction(%) ||100 | ||
| |- | |- | ||
| - | |Duplication ratio ||1.004 | + | |Duplication ratio ||1.003 |
| |- | |- | ||
| |# genes ||4494+3 part | |# genes ||4494+3 part | ||
| Line 1056: | |||
| - | |NGA50 ||3 026 094 | + | |NGA50 ||960 398 |
| |- | |- | ||
| | style="background:#f0f0f0;"| '''Running Time'''|| | | style="background:#f0f0f0;"| '''Running Time'''|| | ||